Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d21
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626...    31   0.34 
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021...    27   3.1  

>03_02_0649 -
           10162202-10162366,10162455-10162533,10162614-10162670,
           10162741-10162847,10163365-10163580,10163690-10163734,
           10164100-10164258,10164714-10164818,10164902-10165084,
           10165490-10165546,10165625-10165720,10166970-10167104,
           10167188-10167262,10167380-10167479,10167682-10167842,
           10167921-10168068,10168706-10169111,10169794-10169860,
           10169953-10170162,10170570-10170711,10170809-10170870,
           10170965-10171037,10171876-10171985,10172087-10172227
          Length = 1032

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 181 EYKIFFLKTTNH*TTELIQRHITPLLKKTSADGTPLLVHLNILDLC*FFLTN 336
           E   FFLK T H    L+++H +P  K         L+ + +LD    F+++
Sbjct: 635 ELSQFFLKITYHNDQALVRKHTSPAYKTWEESSGECLLQIELLDAIRTFISS 686


>03_03_0029 -
           13900912-13901457,13901574-13901709,13901961-13902179,
           13902429-13902801,13903215-13903458
          Length = 505

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 278 ARRCLYISIFWTCANF 325
           AR CL  S FWTCA F
Sbjct: 220 ARDCLVESYFWTCAMF 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,899,975
Number of Sequences: 37544
Number of extensions: 103273
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)