Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d21
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U39667-1|AAC69010.1|  188|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical
           protein C47E12.6b protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   SVKFELGSVARICELYKNNGSVNLFI 79
           S +F L +VAR+   YK  G  NLFI
Sbjct: 594 SPQFRLNTVARLHFDYKLQGDANLFI 619


>Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical
           protein C47E12.6a protein.
          Length = 738

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   SVKFELGSVARICELYKNNGSVNLFI 79
           S +F L +VAR+   YK  G  NLFI
Sbjct: 649 SPQFRLNTVARLHFDYKLQGDANLFI 674


>U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical
           protein F55A4.8a protein.
          Length = 626

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 199 LKTTNH*TTELIQRHITPLL 258
           LKT NH T+  I   +TPLL
Sbjct: 66  LKTRNHSTSNAIDNELTPLL 85


>U39667-1|AAC69010.1|  188|Caenorhabditis elegans Hypothetical
           protein C18A11.6 protein.
          Length = 188

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 318 AQVQNIEMYKQRRAVSGSLFE*RRNMSLN 232
           A++ N+E++K  R +S SL    RN+ L+
Sbjct: 118 ARLDNVELFKFNREISDSLCHYSRNVRLH 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,631,097
Number of Sequences: 27780
Number of extensions: 110050
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)