Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d20
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 32 0.053
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.49
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 1.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 3.5
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 3.5
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 3.5
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 3.5
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 26 3.5
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 3.5
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 25 4.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 4.6
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 25 6.1
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 8.0
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.9 bits (69), Expect = 0.053
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 212 CQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQK 343
C KR R+Y H +T P SI K ++R KR+H++
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQ 620
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.7 bits (61), Expect = 0.49
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 58 SMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVL 237
S+S + KK+++K K KE+V + ++ E +L SK+ + T E + + L
Sbjct: 83 SISSKKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKEKLKKSL 142
Query: 238 CRNL--PPLNASMQRAVTEIDIEDT 306
PL+ + R +D+E T
Sbjct: 143 LEEKLGLPLSDADSRLYKVVDVETT 167
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 329 VSILYATNVSSISISVTARCILALSGGRFLHRTCATVSGNVYI 201
+ +L+AT SI +++ A+ ++ + +F +T +SG YI
Sbjct: 544 LKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYI 586
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 203 CTHCQKRSRRSYAETCH-RSTRVCNEPLLKSISKTRWSRIESKRKHQK 343
C C K+ +RS H RS +P + I R+SR ++ R+H++
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFV-CICGKRFSRRDNLRQHER 471
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 106 KEFKEQVIKTVTRIEESHNVVG 171
K F+EQV K ++IE H V+G
Sbjct: 31 KAFREQVEKHFSKIERLHQVLG 52
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 82 KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLN 261
K+ ++ EF E+ ++ ++R+E+ ++G + K +T+PE V+ + L PLN
Sbjct: 283 KMELKRVTTEFDEKSVE-ISRLEK---LLGKVMEVKSRSMEFTVPEAEIDVIEKRLQPLN 338
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 208 TLPETVAQVLCRNLPPLN--ASMQRAVTEIDIEDTLVAYRIETKTSEVLVASDLDFTACV 381
T+P+ V + N+ L S +++ + +E+ + T S +DFT C
Sbjct: 234 TIPKRVITSMHNNIAELYNPISCIKSLPYLSLEEAKTTLEVHTDRSLFFSGQIIDFTICY 293
Query: 382 VHRIKRK 402
H R+
Sbjct: 294 THNHHRR 300
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 291 RYRRHVGRV*NRNENIRSFSGIR 359
R HVGR NR+ N+ S SG R
Sbjct: 82 RRNNHVGRWANRHSNVSSSSGSR 104
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 290 SISKTRWSRIESKRKHQK-F*WHQILISRRASSTGSRGN 403
SI KT W E R+H K + +S+ SS SR N
Sbjct: 205 SIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSNASRAN 243
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 4.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 325 RFYTRPTCLRYRFQ 284
RF+T P C+RY F+
Sbjct: 23 RFFTLPKCIRYHFR 36
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 147 NPSYCLDYLLLEFLWHFALVDFLLVLN 67
N +Y YL +F+W + VD+LL+ N
Sbjct: 916 NETYSSMYLAGKFVWDTSDVDYLLMYN 942
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 6.1
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 91 KCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASM 270
+ +MP E K Q+ V E+++ + LY + V P +LC LPPL ++
Sbjct: 161 QAQMPLELKCQLADIVI---ENNSDLETLYENIHNVLPLITPSYFFTLLCLILPPLQITL 217
Query: 271 Q 273
Q
Sbjct: 218 Q 218
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/59 (22%), Positives = 23/59 (38%)
Frame = +1
Query: 46 HFLLSMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPET 222
H + + K+ +N + F E + + T SH+ L + + LPET
Sbjct: 275 HLCMYQLPELKQTVNSDHIVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTSKNLLPET 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,611
Number of Sequences: 5004
Number of extensions: 33917
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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