Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d20
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0394 - 24638466-24638723,24638849-24638914,24639437-246394...    29   1.5  
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536...    28   3.5  
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563...    28   4.6  
05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332           27   8.0  
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202     27   8.0  

>05_05_0394 -
           24638466-24638723,24638849-24638914,24639437-24639463,
           24640054-24640122
          Length = 139

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 365 SRSDATKTSDVFVSILYATNVSSISISVTARCILA 261
           S +DA  TSDV  +   A    S+S SV A C LA
Sbjct: 91  SAADAVPTSDVARTAAAAATARSLSFSVAAICFLA 125


>01_06_0957 -
           33352904-33353212,33353316-33353465,33353544-33353684,
           33354116-33354709
          Length = 397

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 292 DIEDTLVAYRIETKTSEVLVASDLDFTACVVHRIKRKHKKN 414
           DIE   V Y + T  +++ +A  + FTAC+VH+ ++ H +N
Sbjct: 202 DIEPCGVTYWLIT-IAQIPIA--VAFTACIVHQKRKSHAQN 239


>05_05_0285 -
           23855219-23855371,23855391-23856063,23856239-23856301,
           23856478-23856604,23856751-23856897,23856968-23856974,
           23857203-23857379
          Length = 448

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 171 SSVSVKRRSPNVHIARNGRAGPMQKPA 251
           +S  ++RR P+VHIA  G +    +PA
Sbjct: 24  ASTGLRRRPPDVHIAGTGASAERSEPA 50


>05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332
          Length = 138

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 155 VTTLLEFCICQKTQSKCTHCQKRSRRSYAETCHRSTRVCN 274
           +T +LE   C +   K T   KR   SY  TCH  T VC+
Sbjct: 56  LTPVLEV-YCGRGDKK-TKRGKRFNHSYGNTCHLLTAVCS 93


>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
          Length = 580

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 221 RSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESK 328
           R R  YAE  HR ++  + P+    S   W R   K
Sbjct: 176 RERNQYAENAHRRSKHVDFPIFNGESPESWIRKAEK 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,717
Number of Sequences: 37544
Number of extensions: 200952
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)