Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d20
         (487 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075397-1|AAL68229.1|  827|Drosophila melanogaster LD28101p pro...    33   0.16 
AE014296-83|AAN11439.1|  827|Drosophila melanogaster CG32344-PA ...    33   0.16 
M27999-1|AAA29011.1|  101|Drosophila melanogaster bithoraxoid pr...    32   0.48 
AY118756-1|AAM50616.1|  101|Drosophila melanogaster GH08635p pro...    32   0.48 
AE014297-2264|AAF55357.1|  101|Drosophila melanogaster CG31275-P...    32   0.48 
AE014297-2263|AAN13721.1|  101|Drosophila melanogaster CG31275-P...    32   0.48 
AY071583-1|AAL49205.1|  495|Drosophila melanogaster RE63964p pro...    31   0.84 
AE014298-2106|AAF48426.1|  495|Drosophila melanogaster CG9081-PA...    31   0.84 
AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy...    30   1.5  
BT022143-1|AAY51538.1|  474|Drosophila melanogaster IP01468p pro...    29   2.6  
AE014297-1521|AAF54813.1|  501|Drosophila melanogaster CG5245-PA...    29   2.6  
AY071660-1|AAL49282.1|  319|Drosophila melanogaster RE74560p pro...    28   7.8  
AE014297-2751|AAF55735.1|  319|Drosophila melanogaster CG4854-PA...    28   7.8  
AE013599-1479|AAM68680.1|  173|Drosophila melanogaster CG30050-P...    28   7.8  

>AY075397-1|AAL68229.1|  827|Drosophila melanogaster LD28101p
           protein.
          Length = 827

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 100 MPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVA 228
           +P++  E+   TVT I++SH++ GVL  S++A + Y     VA
Sbjct: 415 IPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVA 457


>AE014296-83|AAN11439.1|  827|Drosophila melanogaster CG32344-PA
           protein.
          Length = 827

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 100 MPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVA 228
           +P++  E+   TVT I++SH++ GVL  S++A + Y     VA
Sbjct: 415 IPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVA 457


>M27999-1|AAA29011.1|  101|Drosophila melanogaster bithoraxoid
           protein.
          Length = 101

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 VTRIEESHNVVGVLY-LSKDAVQMYTLPETVAQVLCRNLPPLNASM-QRAVTEIDIEDTL 309
           V RI   H +  V+   + +AV   +   T AQ + ++L  L  S  Q  V +ID  + L
Sbjct: 16  VDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAILKHLHGLLVSTCQSVVRDIDPSNKL 75

Query: 310 VAYRIETKTSEVLVASDLDFTACVV 384
              R+ T+  E LVA +  FT  VV
Sbjct: 76  CFMRLGTRKFEYLVAPEEYFTITVV 100


>AY118756-1|AAM50616.1|  101|Drosophila melanogaster GH08635p
           protein.
          Length = 101

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 VTRIEESHNVVGVLY-LSKDAVQMYTLPETVAQVLCRNLPPLNASM-QRAVTEIDIEDTL 309
           V RI   H +  V+   + +AV   +   T AQ + ++L  L  S  Q  V +ID  + L
Sbjct: 16  VDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAILKHLHGLLVSTCQSVVRDIDPSNKL 75

Query: 310 VAYRIETKTSEVLVASDLDFTACVV 384
              R+ T+  E LVA +  FT  VV
Sbjct: 76  CFMRLGTRKFEYLVAPEEYFTITVV 100


>AE014297-2264|AAF55357.1|  101|Drosophila melanogaster CG31275-PB,
           isoform B protein.
          Length = 101

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 VTRIEESHNVVGVLY-LSKDAVQMYTLPETVAQVLCRNLPPLNASM-QRAVTEIDIEDTL 309
           V RI   H +  V+   + +AV   +   T AQ + ++L  L  S  Q  V +ID  + L
Sbjct: 16  VDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAILKHLHGLLVSTCQSVVRDIDPSNKL 75

Query: 310 VAYRIETKTSEVLVASDLDFTACVV 384
              R+ T+  E LVA +  FT  VV
Sbjct: 76  CFMRLGTRKFEYLVAPEEYFTITVV 100


>AE014297-2263|AAN13721.1|  101|Drosophila melanogaster CG31275-PA,
           isoform A protein.
          Length = 101

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 VTRIEESHNVVGVLY-LSKDAVQMYTLPETVAQVLCRNLPPLNASM-QRAVTEIDIEDTL 309
           V RI   H +  V+   + +AV   +   T AQ + ++L  L  S  Q  V +ID  + L
Sbjct: 16  VDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAILKHLHGLLVSTCQSVVRDIDPSNKL 75

Query: 310 VAYRIETKTSEVLVASDLDFTACVV 384
              R+ T+  E LVA +  FT  VV
Sbjct: 76  CFMRLGTRKFEYLVAPEEYFTITVV 100


>AY071583-1|AAL49205.1|  495|Drosophila melanogaster RE63964p
           protein.
          Length = 495

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 115 KEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRN 246
           K +++  +  + E H  V  ++  KD + M+T PE + Q+L  N
Sbjct: 49  KGEILNWLKELREKHGPVFRIWFGKDLMVMFTDPEDIKQLLGNN 92


>AE014298-2106|AAF48426.1|  495|Drosophila melanogaster CG9081-PA
           protein.
          Length = 495

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 115 KEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRN 246
           K +++  +  + E H  V  ++  KD + M+T PE + Q+L  N
Sbjct: 49  KGEILNWLKELREKHGPVFRIWFGKDLMVMFTDPEDIKQLLGNN 92


>AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy
            chain protein.
          Length = 4559

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
 Frame = +1

Query: 28   FYEIFXHFLLSMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMY 207
            F+E     L S+S+++  +I    +PKE    V   +  + ++ N +  LYL+      Y
Sbjct: 3053 FHEWPQQALESVSLRFLSEITV--LPKELALPVSNFMAFVHKTVNDISKLYLANAKRYNY 3110

Query: 208  TLPETVAQVLCRNLPPLNASMQRAV-TEIDIEDTLVAYRIETKTSEVLVASDLDFTACVV 384
            T P++  +++      L+  ++  +   + +E+ L+  ++ + T EV    D+     V 
Sbjct: 3111 TTPKSFLELIALYSKLLHEKVKANLDRRLRLENGLI--KLASCTKEVDALQDVLKVQEVE 3168

Query: 385  HRIKRKHKKNLI 420
             +IK +   NLI
Sbjct: 3169 LKIKNQEADNLI 3180


>BT022143-1|AAY51538.1|  474|Drosophila melanogaster IP01468p
           protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 200 KCTHCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKH 337
           KC+HC K   RS     H  T    +P   S   TR+++  S  +H
Sbjct: 418 KCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHCSTRYTQKSSLGRH 463


>AE014297-1521|AAF54813.1|  501|Drosophila melanogaster CG5245-PA
           protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 200 KCTHCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKH 337
           KC+HC K   RS     H  T    +P   S   TR+++  S  +H
Sbjct: 445 KCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHCSTRYTQKSSLGRH 490


>AY071660-1|AAL49282.1|  319|Drosophila melanogaster RE74560p
           protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 188 KTQSKCTHCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQK 343
           K   +C  C KR R++     H +T   N P       +R++   ++ KHQ+
Sbjct: 203 KKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRIKHQR 254


>AE014297-2751|AAF55735.1|  319|Drosophila melanogaster CG4854-PA
           protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 188 KTQSKCTHCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQK 343
           K   +C  C KR R++     H +T   N P       +R++   ++ KHQ+
Sbjct: 203 KKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRIKHQR 254


>AE013599-1479|AAM68680.1|  173|Drosophila melanogaster CG30050-PA
           protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +1

Query: 214 PETVAQVLCRNLPPLNASMQRAVT---EIDIEDTLVAYRIETKTSEVLVASDLDFTACVV 384
           P   A + CR +PP N +M+ +V    ++ +    +   I      +    D+ F  C V
Sbjct: 23  PNYFANLYCRIIPPKNRTMEASVNIMQQLSVFSGSLRVSIPNAKKVITQIFDITFDVCKV 82

Query: 385 HRIKRKHK 408
            R +RK K
Sbjct: 83  LR-ERKRK 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,026,979
Number of Sequences: 53049
Number of extensions: 362051
Number of successful extensions: 1254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)