Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d18
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    31   0.48 
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC025721-12|AAK29899.1|  278|Caenorhabditis elegans Hypothetical...    28   5.9  
U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U29613-2|AAC47061.1|  111|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 384 YWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFLKSNGYAKT 563
           Y+  HY  L       + + +     + G TF  + A LE+  PL + +WF + N  A+T
Sbjct: 114 YYILHYSALTRLKLVKIVLLILIPSLFQGLTFWTSFAPLEIILPLAK-KWFPQYNFEAET 172

Query: 564 -VLYXMVEVTY 593
            VL  +V++T+
Sbjct: 173 GVLTGIVDITH 183


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 215 GSDP-PARKRCYSRRFISMRSRSYNAMPTYHED 310
           GS P  +R+R  SRR+   + + YN MP  H D
Sbjct: 363 GSIPRSSRERTASRRYREQQQQIYNQMPQNHND 395


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 215 GSDP-PARKRCYSRRFISMRSRSYNAMPTYHED 310
           GS P  +R+R  SRR+   + + YN MP  H D
Sbjct: 363 GSIPRSSRERTASRRYREQQQQIYNQMPQNHND 395


>AC025721-12|AAK29899.1|  278|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.13 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
 Frame = +3

Query: 192 KSPEWCSRAVTLLHGSVAT----VVGLYQCGAEAITPCRLTMKTTPWHYA----LMLWSW 347
           K PEW      L    V +    +V    C    +T      +   +H A    + L+S 
Sbjct: 28  KQPEWSDNKTRLFAVRVVSFTHALVSALGCIFSLLTDVNYVREPYDYHKANAEYVFLFSM 87

Query: 348 GYFAFDLLWCFVY--WGDHYLMLVHHTSALVAVTV 446
           GYF +DLL   ++         L+HH+  + A ++
Sbjct: 88  GYFIYDLLDMHIHGELESSKEYLIHHSLVITAFSI 122


>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 452 TKRLYRLHVCLHAGVFRSHQSPTATTMVFKKQWLCQNRSLXYGGGDISC 598
           T++L + H   H G  RSH  P      F+K  L Q+  +  GG    C
Sbjct: 78  TRQLLKKHWMWHTGE-RSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHEC 125


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 452 TKRLYRLHVCLHAGVFRSHQSPTATTMVFKKQWLCQNRSLXYGGGDISC 598
           T++L + H   H G  RSH  P      F+K  L Q+  +  GG    C
Sbjct: 127 TRQLLKKHWMWHTGE-RSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHEC 174


>U29613-2|AAC47061.1|  111|Caenorhabditis elegans Hypothetical
           protein K02A6.2 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 177 ARDGNKSPEWCSRAVTLLHGSVATVVGLYQCGAEAITPCRLTMKTTPWHY 326
           AR+   +P  C   +T  H  V ++ G+Y   A  +     TM T+PW Y
Sbjct: 43  ARNCFFTPVQCMLPMTDSHKDVQSLHGVYSPTATQVRRSVDTMLTSPWGY 92


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 374  PQKVECEVTPGP*H*SVMPRRCLHGKSAWRYSFCSALI*TDDCSNASVQEGHC 216
            P    C + P P   +V     LH K  +R + C   I T  CS  + + G C
Sbjct: 959  PTIPRCIINPCPISEAVKNETSLHLKKCYRSNDCFDAIMTTHCSMVTQEFGFC 1011


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,872
Number of Sequences: 27780
Number of extensions: 280563
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)