Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d18
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 162 ANSKLRMRSTLIKTQ*KVRDLTPFR 88
           +N++L    TL+K      D TPFR
Sbjct: 86  SNNELVRTKTLVKNAIVTIDATPFR 110


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 222 SLPLSTTLGFCYHHARTTDKANSKL 148
           S PL+   G   HH    D+ N  L
Sbjct: 28  SQPLAVVFGLSLHHIIDVDEKNQIL 52


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +2

Query: 56  PQN*LSKNVLILNGVRSRTFYCVFIKVDLIRNLELALS 169
           P+  L  +  + +G  ++TF C    +DL++ L   ++
Sbjct: 438 PEEILCPHFNVTDGETTKTFCCKGYCMDLLKELSKTIN 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,915
Number of Sequences: 438
Number of extensions: 3569
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)