Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d17
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 71 2e-13
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 67 2e-12
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.27
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 30 0.27
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 0.82
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.82
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 1.4
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 27 1.9
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 1.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 2.5
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 2.5
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 2.5
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 2.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 5.8
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 5.8
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 5.8
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 7.7
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 25 7.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.7
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 7.7
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 7.7
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 7.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 7.7
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 7.7
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 70.5 bits (165), Expect = 2e-13
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Frame = +2
Query: 197 MATDQAKNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD--- 364
M + +R FK+ G DE+RR+R E +E+RK KREE+L KRRN+ D
Sbjct: 1 MESRYLSDRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDV 60
Query: 365 EEEIDKNLATTD---LDELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAG 529
EEE D++ + DE A+ +++ E QL AV + RK LS + +PPID++IA G
Sbjct: 61 EEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACG 120
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 66.9 bits (156), Expect = 2e-12
Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +2
Query: 215 KNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-KNL 388
++R +K G DE+RRRR +E+RK KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 389 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGNTP 538
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I AG P
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVP 124
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.27
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 260 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAE 436
E++ R ++ E K ++ + Q+RR + S E DKN++ DLDE +++ A
Sbjct: 51 ELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAAN 110
Query: 437 NPEAQLAA 460
N +A A
Sbjct: 111 NTKADAEA 118
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 29.9 bits (64), Expect = 0.27
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +2
Query: 179 TASTDKMATDQ--AKNRMHVFKN-AGKDVDE---MRRR---RNEVTVELRKNKREETLQK 331
TAS ++ D +NR +N +G V+E + R+ R + ++ ++N+ T+QK
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQK 320
Query: 332 RRNVPISYSTDEEEIDKNLATT 397
V S+ EEE K+L T
Sbjct: 321 ENTVQQEASSSEEEAVKSLPET 342
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 0.82
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 244 CILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 113
C+ E +FRL +C C + NY++ Q N L SK
Sbjct: 93 CLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLFNHSLNESK 136
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 0.82
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = -3
Query: 516 SSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 361
+SS F S ++ ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 AKNRMHVFKNAGKDVDEMRR--RRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 373
A M V +G DVD ++E T+E K K E Q+R+ + T ++E
Sbjct: 447 ANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDE 502
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = -3
Query: 528 PAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 361
P + SS+I S SSF ++++ +S S+ ++ TSSS ++ + S SSSS
Sbjct: 300 PTSTSSTISSSSSSSSSFSSTLSSSSMSSS-SSFSSSPTSSSSTISSSSSSPSSSS 354
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 528 PAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSSV 358
PA+ SS SH+SS ++A +S F + SSS S S+SS +
Sbjct: 393 PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPI 449
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +2
Query: 215 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 337
++R+ ++ K++DE RR++ E+ +E ++ E+ L+K R
Sbjct: 294 ESRLQKMQDNAKELDESRRKKIEL-LEKKERDEEQFLEKER 333
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 134 VDSLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NK 310
V SLF + ++ ++ TD + + ++A +DE+R+ +E ++++ +K
Sbjct: 430 VKSLFKTYVDVVHIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSK 489
Query: 311 REE--TLQKRRNVPISYSTDE 367
R++ + R P Y D+
Sbjct: 490 RDDIYDILSRSLAPSIYEMDD 510
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 138 ILCFFV*LPRT-VSRQRAQ-IKWRLIKRKTACM 230
IL F+ +PRT + + R + + WR+I R AC+
Sbjct: 400 ILASFLPIPRTKIHQMRVKHVHWRIINRVVACL 432
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 185 STDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQ--KRRNVPISYS 358
ST+ D + N+ K VD ++ + T ++ + Q K+++ ++ S
Sbjct: 9 STEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNES 68
Query: 359 TDEEEIDKNLATTDLDELVMNAANAENPE 445
DE+ + ++ DEL + AEN E
Sbjct: 69 EDEDFAGFGESASENDELESAESEAENDE 97
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +2
Query: 260 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 409
E++R++++ E K KR++ L+ + + DE++ ++ D D+
Sbjct: 5 ELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQ 54
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 209 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPIS 352
Q K F G +++ ++ + ELRK K+E +++ + +S
Sbjct: 996 QEKEEGDTFDAFGNKIEKAKKAKKLTGAELRKKKKERMARRKAGLEVS 1043
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 436 FCVGSVHHQLIKVGGSEVLVDLLLI 362
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 227 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 343
HV + K +E R+R+ E+ E+R+++ +E +K++ +
Sbjct: 352 HVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKL 390
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 287 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 388
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 353 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 517
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 93 RKTCLISLLLSNFMLILCFFV*LPRTVS 176
R T +IS L F+LI+ FFV LP + S
Sbjct: 159 RSTLIISSFLPLFLLIMYFFV-LPESES 185
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 7.7
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +2
Query: 335 RNVPISYSTDEEEIDKN 385
R +P+ YST++EE+ ++
Sbjct: 188 RQIPVGYSTNDEEVTRD 204
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 7.7
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 KDVDEMRRRRNEVTVELRKNKREETLQK-RRNVPISYSTDEEEIDKNLATTDLDELVMNA 424
K +D +R+ E+ +L+ + E+ L + R + S D I A+ + D N
Sbjct: 1625 KQLDNIRKEL-EMRNKLKLSMLEKNLARVRAELEQSKKKDSPAILSLEASKNTDS---NK 1680
Query: 425 ANAENPEAQLAAVQQCRKLLSCDKNPP 505
+N+E P AQ+ + K S D N P
Sbjct: 1681 SNSEVPAAQVKEKKLIAKTHSVDTNSP 1707
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 7.7
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = -2
Query: 190 CARCLDTVRGNYTKKQRINIKL 125
CAR L+ +GN+ + Q++++++
Sbjct: 410 CARALNAEQGNFVRGQKLHLEI 431
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 254 VDEMRRRRNEVTVELRKNKREETLQ-KRRNVPISYSTDEEEIDKNLATTDLDELVMNA 424
++E+R+R ++ N + KRRN+ ST + + N + +DE ++ A
Sbjct: 114 LEEIRKRNQSRKNQMSNNSTTYHRETKRRNINAEASTSDNCNNSNTSVDPMDEYLVTA 171
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 477 FLHCCTAANCASGFSAL 427
FLHCCT+ N +S + L
Sbjct: 105 FLHCCTSPNDSSTWDTL 121
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 314 EETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPE 445
E + +K+ NV S S+ + + + DL EL+ + A +NP+
Sbjct: 375 ERSKEKKANVIESLSSAMDAVLATSSLDDLAELIASFAGNKNPQ 418
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 236 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 337
K D + R+ + + +R+ +REE L+KRR
Sbjct: 180 KKKSSDAWKERKDNEKKAMLMRQQRREENLKKRR 213
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +2
Query: 152 CVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRR-RNEVTVELRKNKREETLQ 328
C IT +E S +MA A ++ F N K D ++ + +N+ ++
Sbjct: 106 CCITYSKIENLSNTRMARLTAPSKGPSFSNLNKPNDLLKAEIEDNEASHYSQNQSSDSDS 165
Query: 329 KRRNVPISYSTDEEEIDKNLATTDLDEL 412
+S + +E+ K L +EL
Sbjct: 166 DEAPEEVSLKSSSDEVKKRLQRLKGNEL 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,818
Number of Sequences: 5004
Number of extensions: 47065
Number of successful extensions: 215
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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