Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d15
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 3.1
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 4.1
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 25 4.1
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 5.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 5.4
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 5.4
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 25 5.4
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 24 9.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 24 9.4
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 169 VTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVEN 297
+++N +S A +T G+ + + +SE+ +SD NF+ N
Sbjct: 48 LSSNAVSEASLDKESTVGNLENQKNRSYSSEIYLHSDTNFLSN 90
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +1
Query: 187 SAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQE 327
S +Q +++ HE++HE+ + +E+ S E+ +++ L+ +E
Sbjct: 143 SQSQNVDSGKTNHEEIHESRHLQTEIEEPS--GLEESSEESVLYSEE 187
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 379 CKQATPVLESE 411
CKQATPVLE E
Sbjct: 406 CKQATPVLEEE 416
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.0 bits (52), Expect = 5.4
Identities = 19/77 (24%), Positives = 29/77 (37%)
Frame = +1
Query: 199 AINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQ 378
AINN+T K H A+ + ++ S F + Q + H + P R
Sbjct: 540 AINNSTEDLSKKHPALHSSRPSDSRSRSKFGNDYQSHSKHNLFRKNSFPKRRRLSNSDTP 599
Query: 379 CKQATPVLESEAIQKAA 429
+ TP E E + A
Sbjct: 600 SETTTPNNEQEQVSNQA 616
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.0 bits (52), Expect = 5.4
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 151 GQQGDSV-TANLLSAAQAINNATAGHEK-LHEAMQMASELNNYSDPNFVENLQKNDLHKQ 324
G++G V TA +SA + A + L E+++ + + +DP + + K K+
Sbjct: 771 GKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDATDPQTILAILKQKKAKK 830
Query: 325 EVLAAEPVIRHHCRCMQQCKQATPVLESE 411
+ A E I TP ESE
Sbjct: 831 KHAAREMEISSQIPSNDSSNVQTPTAESE 859
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 220 GHEKLHEAMQMASELNNYSDPNFVENLQKNDLHK 321
GH L EA + + + N + +L +NDLH+
Sbjct: 537 GHMSLEEARKKLLNEKDMGELNMIIDLIRNDLHQ 570
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 232 LHEAMQMASELNNYSDPN 285
LH+A+ + +E+ N+ DPN
Sbjct: 62 LHDAVTIINEMRNWRDPN 79
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 142 SIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHK 321
+ +G+QG +L+S A A A GH L + +++N S P+ + N + H
Sbjct: 444 NFEGRQGAKGRTHLVSPAMAAAAAIKGH--LCNVREFFGDVSNGS-PSIITNKNYDPSHD 500
Query: 322 QE 327
E
Sbjct: 501 VE 502
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 277 DPNFVENLQKNDLHKQEVLAAE 342
DP++ EN +K D K E+L E
Sbjct: 349 DPDYEENEKKYDAIKHEILGEE 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,847
Number of Sequences: 5004
Number of extensions: 28014
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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