Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d15
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    28   3.6  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    28   3.6  
Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical p...    27   6.3  
AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 166 SVTANLLSAAQAINNATAGHEKLHEAMQMASE-LNNYSDPNFVENLQKNDLHKQEVLAAE 342
           ++ ANL    + +N      +K+ +   M SE + NYS PNF+ NLQ   L + ++ A  
Sbjct: 510 ALNANLTVFDKILNFWEVLDKKIQDKTVMHSEKVENYS-PNFIRNLQL--LSQLQLSADV 566

Query: 343 PVIRHHCRCMQQCKQATPVLE 405
              R    C+  C +  P ++
Sbjct: 567 KRTRALSTCLFACVEQIPYIK 587


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 256 SELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQ 420
           S L+NY+  N  +  ++N   K EVL   PV RH  +     ++   +++ + I+
Sbjct: 237 SSLSNYTSNNVRDYWRRNSAKKPEVLRRVPV-RHQFKHSTSVRKMNTIIDLKKIK 290


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 256 SELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQ 420
           S L+NY+  N  +  ++N   K EVL   PV RH  +     ++   +++ + I+
Sbjct: 237 SSLSNYTSNNVRDYWRRNSAKKPEVLRRVPV-RHQFKHSTSVRKMNTIIDLKKIK 290


>Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical
           protein Y57G11C.1 protein.
          Length = 633

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 183 KIRSNRVTLLTIYRYFW 133
           KI +  VTL TIY YFW
Sbjct: 269 KISTKTVTLGTIYNYFW 285


>AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical
           protein Y32F6A.4 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   IFVTNFNLHVLYFLLRSKNINN 71
           I VT F + V+Y LL SKNI N
Sbjct: 148 IDVTQFMISVVYLLLASKNIMN 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,252,328
Number of Sequences: 27780
Number of extensions: 161083
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)