Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d14
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...   244   1e-65
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    30   0.24 
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    28   1.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.9  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   3.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   6.8  

>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score =  244 bits (596), Expect = 1e-65
 Identities = 105/179 (58%), Positives = 140/179 (78%)
 Frame = +2

Query: 74  MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKP 253
           M+ L+ + T+  FEKL +YIG N+  LIDRPD  +CFR +KDRVYY+SE+ + +A +V  
Sbjct: 1   MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVAR 60

Query: 254 DNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 433
            NL+S G CFGKFTKTNKFRLHITAL YI+ YA +K+WVK + E  FLYG+H++K+ +GR
Sbjct: 61  QNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGR 120

Query: 434 ITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTL 610
           IT++TP+HQGVV+ +M+D P+GFGV +R+T E R  +P A + FHQADVGEY+R EDTL
Sbjct: 121 ITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 359 KVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRH 538
           ++ VK SA     YG  ++  GL R       ++ +V++T     I  G+A  +T E   
Sbjct: 273 RIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELST 332

Query: 539 AD 544
            D
Sbjct: 333 CD 334


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 192 FSLKQYVPSGLSI-NNLTFTPMYLVSFSNNILVRSSDNTFI 73
           FS K  +    SI NN   TP    SFSN +L  +S + ++
Sbjct: 290 FSFKNLLQDASSISNNFEITPESWCSFSNQLLFSTSKSDYV 330


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 25  FNSRVFIFREYNKIIENESIIRRSYKNIIREANQIH 132
           ++ R++  ++Y +  +    ++RSY +++ EAN  H
Sbjct: 409 YSERLYYKQKYEQTCQEVERLQRSYNHVMEEANLQH 444


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 418 KWLGPDNRKYTETSRCG-GINDVRYSDWL 501
           KW+ PD  K  ET +C   I DV+ S +L
Sbjct: 150 KWVAPDKAKLNETWKCYLHIQDVKKSYFL 178


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S VV  +TP  I  S +VNT+TP
Sbjct: 1334 SSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 1379



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S VV  +TP  I  S +VNT+TP
Sbjct: 1406 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTP--ITSSTVVNTSTP 1451



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S VV  +TP  I  S +VNT+TP
Sbjct: 2174 SSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 2219



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S VV  +TP  I  S +VNT+TP
Sbjct: 2246 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTP--ITSSTVVNTSTP 2291



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
           SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 542 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 587



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 1430 SSTVVNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 1475



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 2318 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2363



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 2654 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2699



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 2726 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2771



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 2882 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2927



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 2978 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 3023



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + S T     T+V   +    S+V+  +TP  I  S +VNT+TP
Sbjct: 3242 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 3287



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + + T     T+V   +    S VV  +TP  I  S +VNT+TP
Sbjct: 1154 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 1199



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 603  SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 460
            SS  + + T     T+V   +    S VV  +TP  I  S +VNT+TP
Sbjct: 1466 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 1511


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 164 PDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYIS 343
           PD T  F   K  V Y+SE L+    +V    +  +     +  + N FRL  T L  ++
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSV--SKIYGSLDQEARLNEINNFRLGKTNLLVVT 403

Query: 344 PYA 352
             A
Sbjct: 404 DVA 406


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 260 LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLY 400
           L++ G  + K  K     L I A +Y   Y   KVW  P+    +LY
Sbjct: 338 LLACGATYTKDLKPTNTLL-IAASSYGQKYGAAKVWNIPTVHHSWLY 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,521
Number of Sequences: 5004
Number of extensions: 58351
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)