Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d14
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637    175   2e-44
07_03_1408 - 26353389-26355191                                         31   0.99 
03_03_0094 + 14378953-14380728                                         30   1.3  
06_01_0085 - 678144-678335,678466-678639,678721-678912,679756-67...    30   1.7  
12_01_0251 - 1858815-1860209                                           28   7.0  
01_06_0344 - 28576568-28576699,28576881-28576961,28577036-285771...    28   7.0  
11_02_0015 - 7355989-7357092                                           27   9.2  

>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
          Length = 216

 Score =  175 bits (426), Expect = 2e-44
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 8/187 (4%)
 Frame = +2

Query: 74  MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPD--------GTYCFREKKDRVYYISEKLL 229
           M+ L E  T+++FEKL K+ G N+K L++RP         G YC R  K+RVYY SE L+
Sbjct: 1   MRALDEKETKMVFEKLFKFTGPNLKHLLERPAVEGPDPQAGRYCLRLHKNRVYYASEALV 60

Query: 230 HLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHH 409
             A  V    L   GT  GKFT    F L + AL  ++ +A  +VW+KP  E+ FL+G+ 
Sbjct: 61  RRATAVARPRLAGVGTPIGKFTHGGAFHLTVHALDLLAAHARRRVWLKPDTERSFLFGNS 120

Query: 410 IIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEY 589
           + KS L RITENT  + GVVV++M+D+P+GFG+A+R+  +CR AD  A +V HQ+D GEY
Sbjct: 121 VPKSSLARITENTKANDGVVVMSMADVPLGFGIAARSAQDCRKADTNAVVVLHQSDAGEY 180

Query: 590 IRSEDTL 610
           +R E+ L
Sbjct: 181 LRREEEL 187


>07_03_1408 - 26353389-26355191
          Length = 600

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 368 VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 526
           VK SA     YG  ++  GL R   +    + VV++T     I  G+A  TTA
Sbjct: 315 VKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMTTA 367


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 368 VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 526
           VK SA     YG  ++  GL R        + VV++T     I  G+A  TTA
Sbjct: 319 VKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTTA 371


>06_01_0085 -
           678144-678335,678466-678639,678721-678912,679756-679911,
           680091-680158,680878-681127
          Length = 343

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 490 SDWLWRSFKNDGRMSTR*SFGDDCLPPG 573
           S W W+ FK+     T  SFGD  +P G
Sbjct: 153 SAWTWKKFKSPKESDTELSFGDFTVPNG 180


>12_01_0251 - 1858815-1860209
          Length = 464

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 25/107 (23%), Positives = 39/107 (36%)
 Frame = +2

Query: 146 KLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHIT 325
           +LL    D  Y  R           +L  +A +  P +    G+   K    + +R   T
Sbjct: 200 RLLAADDDAMYSSRSAHLNQMASIAQLQQMAVSSCPPSTGGGGSVQYKDDDDDPYRSPAT 259

Query: 326 ALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGV 466
            LT++SP A       P+A   FL     +   +  + E    H GV
Sbjct: 260 PLTFVSPPASTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGV 306


>01_06_0344 -
           28576568-28576699,28576881-28576961,28577036-28577131,
           28578862-28579038,28579633-28580130
          Length = 327

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 578 RRPGGRQSSPKDQRVDILPSFLKLRQSQSEYLTSLIPPHLDVSVYF 441
           R  GG    P  +R  +        Q  S ++ S  PPHLDV+ +F
Sbjct: 154 RGRGGDAERPHRERPCLSRRVTVQEQISSSFMDSPPPPHLDVAPFF 199


>11_02_0015 - 7355989-7357092
          Length = 367

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 415 QKWLGPDNRKYTETSRCGG-INDVRYSDWLWRSFKNDG 525
           Q + G + R  +E    G  I  V  +DW+WR+F  DG
Sbjct: 227 QPFFGGEERTDSELRLDGAPIVTVSRTDWMWRAFLPDG 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,336
Number of Sequences: 37544
Number of extensions: 362528
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)