Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d10
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 228 2e-60
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 43 2e-04
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 38 0.005
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 38 0.005
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 38 0.005
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 36 0.016
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 28 5.6
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 28 5.6
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical... 28 5.6
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 27 9.8
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 27 9.8
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 228 bits (558), Expect = 2e-60
Identities = 107/144 (74%), Positives = 126/144 (87%), Gaps = 1/144 (0%)
Frame = +2
Query: 155 EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVT 334
E +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD ATIQVYEETSGVT
Sbjct: 4 ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGVT 63
Query: 335 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 514
+GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQSIYIPKG++ +L+RE W+
Sbjct: 64 IGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREARWD 123
Query: 515 F-NPLNVKVGSHITGGDLYGIVHE 583
F +++VG H+TGGD+ G V E
Sbjct: 124 FVVSKDLRVGGHVTGGDIIGTVDE 147
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Frame = +2
Query: 137 IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMAT 301
I N R Y V V+GP+V + E+V++ ++ G+++ + + A
Sbjct: 18 IRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAV 77
Query: 302 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 430
+QV+E TSG+ + + TG L + +LG IF+G +P+
Sbjct: 78 VQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPI 121
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/93 (24%), Positives = 41/93 (44%)
Frame = +2
Query: 152 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 331
N E G V ++ + + E+V + + G + L+ D + V+ +
Sbjct: 25 NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 83
Query: 332 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 430
GD V RTG + V +G G+LG + D + P+
Sbjct: 84 REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/93 (24%), Positives = 41/93 (44%)
Frame = +2
Query: 152 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 331
N E G V ++ + + E+V + + G + L+ D + V+ +
Sbjct: 52 NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 110
Query: 332 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 430
GD V RTG + V +G G+LG + D + P+
Sbjct: 111 REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 37.9 bits (84), Expect = 0.005
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Frame = +2
Query: 137 IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMAT 301
I N + + Y VF V+GP+V + E+V++ +G+++ + A
Sbjct: 30 IQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAV 89
Query: 302 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 430
+QV+E T+GV TG + +LG IF+G +P+
Sbjct: 90 VQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPI 133
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 36.3 bits (80), Expect = 0.016
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +2
Query: 167 GYVFAVSGPVVTAE--KMSGSAMYELVRVGYN-ELVGEIIRLEGD-MATIQVYEETSGVT 334
G + AV G VV + + + L VG + L+ E+ + GD + + T G+
Sbjct: 70 GRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLV 129
Query: 335 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR-EVDW 511
G PV TG P+ + +GP LG I + I P+ + + + P V+
Sbjct: 130 RGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQ 189
Query: 512 EFNPLNVKV 538
E +KV
Sbjct: 190 EILVTGIKV 198
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 411 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 298
+ +E IP PS D S GS TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 411 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 298
+ +E IP PS D S GS TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344
>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
protein Y51A2D.7b protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 352 PYWKAFVSRTWSRYLGFH-L*RYSASPQGHQRADSVHLH 465
P++ +++ W+ + G L +S P+ + DS+H+H
Sbjct: 529 PFYPQMLAKMWAEFGGLRELIAFSFDPESPLKRDSIHVH 567
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +2
Query: 65 SFPSFSSRIKNN*FKMASKGGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVR 244
++P S + N K KGGL + N+E F ++ + E++ + +++ +
Sbjct: 363 NYPQIVSNVSTN-NKNRFKGGLEKLHVYANDELFSKMYPELVVNIECERIGETKIHKYIL 421
Query: 245 VGYNELVGEIIRLEGDMATIQVYEETSGVTV 337
YN + + I + I +E T TV
Sbjct: 422 SKYNIDINKYIDINKYNDIIITHENTVNPTV 452
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/69 (20%), Positives = 36/69 (52%)
Frame = +2
Query: 329 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVD 508
+T+GD +L + + LGS++ +++ L D+N++ + + I + A+ ++
Sbjct: 367 LTIGDLILANTLLFQLSIPLNFLGSVYREVRQGLVDMNQMFSLLTLKPKIVEAADAKRLE 426
Query: 509 WEFNPLNVK 535
N +++K
Sbjct: 427 IVDNDISLK 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,798,439
Number of Sequences: 27780
Number of extensions: 278975
Number of successful extensions: 819
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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