Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d09
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   2.4  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   4.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   4.2  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   5.5  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   7.3  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    24   9.6  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    24   9.6  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 391 MASAGPGSTHIHNGVLKNINSTA 323
           ++S+G GST IH G +++ NS A
Sbjct: 224 LSSSGDGSTAIHAGPIQHQNSNA 246


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 376 PGSTHIHNGVLKNINSTAQHS 314
           P  TH+H G L   +S+A+HS
Sbjct: 200 PSGTHLHEGSLLLEDSSARHS 220


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 255 YNFPAFLYFFLQEVMLQFVLLCCAVLFIFF 344
           Y FP  +Y     V++ F+ LC  V    F
Sbjct: 457 YKFPGSVYLSYYGVLINFLALCALVYISIF 486


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 440 FVTKFNVHTGAADICHNGKCRTW*HTYPQWSTEE 339
           F  K   HTG  D C +  CR     Y ++S  E
Sbjct: 111 FSYKAREHTGKLDFCAHCNCRFTITPYSKYSNSE 144


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 376 PGSTHIHNGVLKNINSTAQHSKTNCSITSCKKK 278
           PG  HI+     N NST   SK   S T+  K+
Sbjct: 110 PGQKHINGKPPSNSNSTEDASKPTSSDTASVKE 142


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 335 KQHRTAQQDKLQHHFLQKKIEESWKIVFSK 246
           K +   + DK+Q +  Q  ++  W+I+FSK
Sbjct: 255 KDNAEVRVDKVQEY--QNIVDAEWRIIFSK 282


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 356 QWSTEEYKQHRTAQQDKLQHHFLQKKI 276
           ++  E+YK+HRT +  K + + + +KI
Sbjct: 127 RYDNEKYKKHRTLEDLKDRFYSVSRKI 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,085
Number of Sequences: 5004
Number of extensions: 39955
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)