Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d09
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1070 + 10932102-10932291,10936686-10936947,10937158-109372... 31 0.58
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256... 29 1.8
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 29 2.3
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 29 2.3
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 29 2.3
08_02_0395 - 16638499-16638750 28 3.1
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 28 4.1
11_03_0161 - 10949552-10950925 28 4.1
11_01_0165 - 1349319-1349399,1349523-1349609,1349691-1349809,134... 28 4.1
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 27 9.5
05_02_0110 + 6702828-6703065,6703145-6703351,6703536-6703684,670... 27 9.5
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 27 9.5
>08_01_1070 +
10932102-10932291,10936686-10936947,10937158-10937292,
10937468-10938791
Length = 636
Score = 30.7 bits (66), Expect = 0.58
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 324 AVLFIFFSTPLWICVLPGPALAIVTYIXCTCVHIELGHKH 443
A +F+ S P W+ V ALA ++ + ++ +LGH+H
Sbjct: 322 AQVFLRDSFPTWVAVASYAALAALSVVAVPLLYPQLGHRH 361
>05_01_0327 -
2565574-2565654,2566037-2566099,2566511-2566591,
2566710-2566787,2566892-2566984,2567108-2567225,
2567568-2567695,2567808-2568083,2568763-2568917,
2568997-2569140,2569427-2569844
Length = 544
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -3
Query: 321 STARQIAASLPA-KKNRGKLENCIQQGLAELG*PGHPDLRGEPAAQALRTPTLSITFTCN 145
S Q AAS KKNRG N + G E G PG E + R P C+
Sbjct: 33 SPGSQSAASTERRKKNRGSKRN-LSDGSGEDGRPGKKINLEEEELEEERMPLEDEASACS 91
Query: 144 SCYNQIFNTY 115
SC + + Y
Sbjct: 92 SCSSPLCEPY 101
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 299 HHFLQKKIEESWKIVFSKA*PN*GDPGILIFGASLPHKHYA 177
HH LQ++ W + S A P+ P L A+ P K+YA
Sbjct: 366 HHHLQQQRANPWPVQESYAIPHDETPPPLDMRAATPRKNYA 406
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 173 GVRSACAAGSPRRSGCPGHPSSAR 244
G R C G PRR G P H + R
Sbjct: 43 GCRRGCRRGGPRRGGAPAHLRAPR 66
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 299 AAICLAVLCGAVYI-LQYSIVDMCATRSCTCHCDI 400
A C A C A + L+ C TRSC CHC I
Sbjct: 97 AVDCAAAGCAAAEVTLRARWWVHCLTRSCDCHCRI 131
>08_02_0395 - 16638499-16638750
Length = 83
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 287 AGSDAAICLAVLCGAVYILQYSIVDMCATRSCTCHCDIYXLHLC 418
A A +CL VL ++ + AT + TC+CD + C
Sbjct: 5 AAKIAVVCLVVLSVGQSMMMTAAATTAATGATTCNCDTSGCYNC 48
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 309 VLLCCAVLFI---FFSTPLWICVLPGPALA 389
VLLCCAVL + F+TPL I + P +A
Sbjct: 31 VLLCCAVLLLPIYLFTTPLLIFLGQDPKIA 60
>11_03_0161 - 10949552-10950925
Length = 457
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 216 PDLRGEPAAQALRTPT-LSITFTCNSCYNQIFN 121
PD+R E +L T LS FTC SC NQ+ +
Sbjct: 243 PDVRVESGFLSLYTSDDLSGKFTCGSCRNQLLS 275
>11_01_0165 -
1349319-1349399,1349523-1349609,1349691-1349809,
1349899-1350137,1350240-1350296,1350593-1350679,
1350822-1350955,1350971-1351357
Length = 396
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 309 VLLCCAVLFI---FFSTPLWICVLPGPALA 389
VLLCCAVL + F+TPL I + P +A
Sbjct: 31 VLLCCAVLLLPIYLFTTPLLIFLGQDPKIA 60
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 353 WSTEEYKQHRTAQQDKLQHHFLQKKIE 273
+ST E K + ++DK++ H L+KK E
Sbjct: 364 FSTLEKKSDKQGEEDKIKEHQLEKKRE 390
>05_02_0110 +
6702828-6703065,6703145-6703351,6703536-6703684,
6704096-6704369,6706011-6706228
Length = 361
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 403 IYVTMASAGPGSTHIHNGVLKNINSTAQHSKT 308
IY+T+ G+ + NG LK+ NS + + T
Sbjct: 221 IYLTLYGTSNGADYDRNGCLKSYNSLSSYHNT 252
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 377 TW*HTYPQWSTEEYKQH 327
TW H YP+W EE H
Sbjct: 157 TWEHLYPEWIDEEELYH 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,375
Number of Sequences: 37544
Number of extensions: 262999
Number of successful extensions: 597
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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