Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d06
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.1  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   1.5  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   3.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.8  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 270 SICYLNSLL*YYFI 229
           ++CYLNSL+ YYFI
Sbjct: 621 NLCYLNSLIQYYFI 634


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
 Frame = +1

Query: 172 KQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQ 351
           ++ +Q+   K K + ++A  KI   KR++   +  ++++ +KQR +R            Q
Sbjct: 175 RKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQRPSRRSARVRMATDNAQ 234

Query: 352 MTPVNV-FPKAT--KFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQIN 489
            +P  +  PK T  K  R   + + +   +    ++QP++T ++  Q++
Sbjct: 235 KSPSPIPSPKKTAKKRVRFAGSLEELPKFSLEYQLAQPISTVDMYAQVH 283


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 79  MFEFGIWRSLLKKIGRYSTVYFL 11
           MFEF ++ S+++KI R   +YFL
Sbjct: 722 MFEFAVFISMVRKIVRPGVLYFL 744


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 291 KFGQFVSSICYLNSLL*YYFISSIHNLWFSFESSLLNTLLSMFILSFRPD 142
           + G+ +  + +LNSLL  +  + +++L+ S    L   L SM  LS R +
Sbjct: 479 ELGRMIEDLPFLNSLLRTFLPTLVYSLFISISPFLFRWLSSMQGLSSRAE 528


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 552 CGFLXIFLCTNCFISYKSTFIVDLTSKIRCVQ 457
           CG+   + C NC  SY S     + S+ RC++
Sbjct: 105 CGYWGKYACQNCGTSYCSKGCEVIHSETRCMK 136


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 279 FVSSICYLNSLL*YYFISSIHNLWFSFESSLLNTLLSMFILSFR--PDVYFLFLY 121
           F  S   L   L  +F   +  L FSF  S L  L  +FI+ F   P ++FLF +
Sbjct: 105 FTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFF 159


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 371 FQRPPNS-LELLSTKIECSQIHPGKLSHSL 457
           F + PN  +E+ + K  CS  H G++S SL
Sbjct: 116 FSKTPNKHIEVKNLKDLCSPSHSGRISKSL 145


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
 Frame = +1

Query: 151 KRQNKHGKQGVQ--QGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRD-ARLKL 321
           +++NK  K  +   Q  L +K +++   +  + + R  +  A  KLAE+  +RD    K+
Sbjct: 398 EQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKI 457

Query: 322 EHLKMQRRGQMTPVNVFPKATKFTRTVVN-KDRVFTDTSRQVVSQPLNTPNLRRQINNKR 498
           +  +   +     +N      K    +++ KD+   +   Q+  Q   + + +  + + +
Sbjct: 458 KDFEKIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQ 517

Query: 499 RFVGNK 516
           R + N+
Sbjct: 518 RDILNE 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,427
Number of Sequences: 5004
Number of extensions: 38546
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)