Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d06
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437...    29   2.6  
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    29   2.6  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    28   6.0  
10_08_0471 + 18153024-18153026,18153310-18153429,18153826-18153957     27   8.0  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    27   8.0  

>03_05_0086 -
           20642873-20643033,20643384-20643504,20643698-20643744,
           20643882-20643921,20644331-20644418,20644949-20645161,
           20645589-20645628,20646332-20646416
          Length = 264

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 196 LKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 318
           L+ + ++ + RN+    +  ++  A+D+LA+L +QRD  +K
Sbjct: 159 LEKEQRISEIRNQCTIIRTTELAAAQDRLADLERQRDEVMK 199


>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 196 LKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRD 306
           L+ + ++++ RN+    +  ++  A+D+LAEL +Q+D
Sbjct: 129 LEKEQRILELRNQCTIIRTTELAAAQDRLAELERQKD 165


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +1

Query: 163 KHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQR 342
           K G++  Q+  + +  + MD   KI + KR +      KL E   ++DA+ ++EHL  ++
Sbjct: 577 KQGEEQQQKRKVDSLAKEMD--KKISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKK 634


>10_08_0471 + 18153024-18153026,18153310-18153429,18153826-18153957
          Length = 84

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +1

Query: 163 KHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQR 342
           K+ K+G+     K KP+V +   K   K ++   +A  K A+LA +R  +++ E  ++Q 
Sbjct: 12  KNNKRGLGSKEPKLKPKVDEDGEKDPKKPKL---EAPKKKAKLAAKRIRKMQEEEKRLQE 68

Query: 343 R 345
           R
Sbjct: 69  R 69


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 232 KIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPV 363
           K++ K + +   A +K+ +L KQ D + KLE    Q RG++  V
Sbjct: 379 KLVEKHKKEKEIALNKILQLEKQLDEKQKLELEIQQLRGRLLVV 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,596
Number of Sequences: 37544
Number of extensions: 216730
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)