Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d06
         (569 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93241-3|CAI19835.1|  421|Homo sapiens protein ( Human DNA seque...    33   0.71 
CR456456-1|CAG30342.1|  421|Homo sapiens dJ222E13.3 protein.           33   0.71 
BC095411-1|AAH95411.1|  421|Homo sapiens polymerase (DNA-directe...    33   0.71 
BC056912-1|AAH56912.2|  392|Homo sapiens polymerase (DNA-directe...    33   0.71 
BC049840-1|AAH49840.1|  421|Homo sapiens polymerase (DNA-directe...    33   0.71 
BC019643-1|AAH19643.1|  229|Homo sapiens POLDIP3 protein protein.      33   0.71 
BC001488-1|AAH01488.2|  417|Homo sapiens POLDIP3 protein protein.      33   0.71 
AY506562-1|AAR91612.1|  185|Homo sapiens polymerase delta intera...    33   0.71 
AY422990-1|AAQ94604.1|  421|Homo sapiens RNA-binding protein P46...    33   0.71 
AL160112-1|CAB77059.1|  392|Homo sapiens hypothetical protein pr...    33   0.71 
AL160111-1|CAB77058.1|  421|Homo sapiens hypothetical protein pr...    33   0.71 
AB055760-1|BAB33368.2|  424|Homo sapiens KIAA1649 protein protein.     33   0.71 

>Z93241-3|CAI19835.1|  421|Homo sapiens protein ( Human DNA sequence
           from clone RP1-222E13 on chromosome 22. ).
          Length = 421

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>CR456456-1|CAG30342.1|  421|Homo sapiens dJ222E13.3 protein.
          Length = 421

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>BC095411-1|AAH95411.1|  421|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 3 protein.
          Length = 421

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>BC056912-1|AAH56912.2|  392|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 3 protein.
          Length = 392

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>BC049840-1|AAH49840.1|  421|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 3 protein.
          Length = 421

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>BC019643-1|AAH19643.1|  229|Homo sapiens POLDIP3 protein protein.
          Length = 229

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>BC001488-1|AAH01488.2|  417|Homo sapiens POLDIP3 protein protein.
          Length = 417

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 31  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 86

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 87  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 124


>AY506562-1|AAR91612.1|  185|Homo sapiens polymerase delta
           interacting protein 46 protein.
          Length = 185

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>AY422990-1|AAQ94604.1|  421|Homo sapiens RNA-binding protein P46
           protein.
          Length = 421

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>AL160112-1|CAB77059.1|  392|Homo sapiens hypothetical protein
           protein.
          Length = 392

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>AL160111-1|CAB77058.1|  421|Homo sapiens hypothetical protein
           protein.
          Length = 421

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 35  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 90

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 91  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 128


>AB055760-1|BAB33368.2|  424|Homo sapiens KIAA1649 protein protein.
          Length = 424

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +1

Query: 178 GVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKL--EHLKMQRRGQ 351
           G+QQG L    +    + +  ++++I ++DAR KL      +DAR KL  +  + + +G+
Sbjct: 38  GIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLG----VKDAREKLLQKDARFRIKGK 93

Query: 352 MTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTP 468
           +        + K   TV  K R   D +R+ +S   ++P
Sbjct: 94  VQDAREMLNSRKQQTTVPQKPRQVAD-AREKISLKRSSP 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,731,553
Number of Sequences: 237096
Number of extensions: 1200438
Number of successful extensions: 6201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6201
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)