Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d06
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    31   0.44 
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    31   0.44 
AC024758-2|AAK73905.2|  208|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    30   1.0  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    30   1.0  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC017117-8|AAF16611.1|  138|Caenorhabditis elegans Hypothetical ...    29   3.1  
U53151-1|AAB37069.1|  226|Caenorhabditis elegans Clathrin light ...    28   5.4  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    28   5.4  
AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 177 RCSARSSQS*TTSYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*IEARTSQNAKKRTN 353
           RC+   S     SY C        E   + C  Q +  +C +  C       ++ K+  N
Sbjct: 393 RCTGAGSD---LSYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLN 448

Query: 354 DTCKCFSKGHQIHSNCCQQR*SVHRYIQASCL 449
              +C S+GH  H  CC Q   V +  Q +C+
Sbjct: 449 TWVQCASEGHD-HLRCCLQE-EVSKPCQTACM 478


>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
           protein T04A11.3 protein.
          Length = 1014

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 177 RCSARSSQS*TTSYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*IEARTSQNAKKRTN 353
           RC+   S     SY C        E   + C  Q +  +C +  C       ++ K+  N
Sbjct: 214 RCTGAGSD---LSYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLN 269

Query: 354 DTCKCFSKGHQIHSNCCQQR*SVHRYIQASCL 449
              +C S+GH  H  CC Q   V +  Q +C+
Sbjct: 270 TWVQCASEGHD-HLRCCLQE-EVSKPCQTACM 299


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 177 RCSARSSQS*TTSYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*IEARTSQNAKKRTN 353
           RC+   S     SY C        E   + C  Q +  +C +  C       ++ K+  N
Sbjct: 393 RCTGAGSD---LSYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLN 448

Query: 354 DTCKCFSKGHQIHSNCCQQR*SVHRYIQASCL 449
              +C S+GH  H  CC Q   V +  Q +C+
Sbjct: 449 TWVQCASEGHD-HLRCCLQE-EVSKPCQTACM 478


>AC024758-2|AAK73905.2|  208|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.2 protein.
          Length = 208

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 208 PQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNVFPKA 381
           P   D   + +SKK   +T   D L E  +  + R      +++R+GQ   V+  PKA
Sbjct: 13  PDEEDTECRKVSKKIASVTLESDSLPESPQTAEERTARRKKRIKRKGQQMDVDPTPKA 70


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +1

Query: 145 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 324
           +S ++ +  K+G++    K     +D +NK   KK+++  ++RD   E A    A L  +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306

Query: 325 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 441
            + +Q+   + Q+   +N   K  +     ++KDR   D  R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +1

Query: 145 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 324
           +S ++ +  K+G++    K     +D +NK   KK+++  ++RD   E A    A L  +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306

Query: 325 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 441
            + +Q+   + Q+   +N   K  +     ++KDR   D  R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
           and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +1

Query: 145 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 324
           +S ++ +  K+G++    K     +D +NK   KK+++  ++RD   E A    A L  +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306

Query: 325 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 441
            + +Q+   + Q+   +N   K  +     ++KDR   D  R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +1

Query: 145 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 324
           +S ++ +  K+G++    K     +D +NK   KK+++  ++RD   E A    A L  +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306

Query: 325 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 441
            + +Q+   + Q+   +N   K  +     ++KDR   D  R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 157 QNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKM 336
           + K  K+ +++   K +  +   R      +R+Q  +A+DK  E A++ D     E  K 
Sbjct: 374 EEKQKKENLERATQKEREHIERHREAQERHERLQALEAKDKEDERAREEDKAKAREEAKS 433

Query: 337 QR--RGQMTPVNVFPK 378
           ++  + + + V + PK
Sbjct: 434 KKDTKAEKSKVTIDPK 449


>AC017117-8|AAF16611.1|  138|Caenorhabditis elegans Hypothetical
           protein F43C11.3 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +1

Query: 175 QGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRG-- 348
           Q +    L  +P+V+  R   +  K  Q     D    +  Q +     E+L  +  G  
Sbjct: 17  QAIPNVVLTGEPRVIARRILNVDMKTAQQLVHPDNQMHVKYQVNVVKNPENLATESSGYI 76

Query: 349 --QMTPVNVFPKATKFTRTVVNKDRVFTD 429
             + TPV ++ +  +  R   N+DRV TD
Sbjct: 77  TEERTPVTIYRRILRPARITFNEDRVVTD 105


>U53151-1|AAB37069.1|  226|Caenorhabditis elegans Clathrin light
           chain protein 1 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 211 QVMDARNKIISKKRIQI-TDARDKLAELAKQRDARLKLEH 327
           Q++  +++   KK+I++  +A+ +L E  KQR+  L+L H
Sbjct: 130 QLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSH 169


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 145 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 318
           + KR+ K GK+G +     A  +   A  +     R ++ +  D +A++AK+  A+ K
Sbjct: 536 KEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSVADVAKKGGAKWK 593


>AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical
           protein Y38F1A.3 protein.
          Length = 858

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 288 FGQFVSSICYLNSLL*YYFISSIHNLWFSFESSLLNTLLSMFILSFRPDVYFLFLY 121
           F  F+  IC + SL      S  H  W  FE   + T++   ILS   D  F+F++
Sbjct: 256 FEAFLGVICPILSLC----ASFGHLFWMGFEYLPIVTVVPFLILSIGVDDVFIFIH 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,862
Number of Sequences: 27780
Number of extensions: 214634
Number of successful extensions: 675
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)