Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d05
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   7.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.2  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   7.2  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   9.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.5  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   9.5  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 342 NLMKHSIITF-ILFYERASELSANFRTIL*FRCTFTDQRSVYLINILS 482
           NL+ +++ T  + ++ER  + S+N R++L     FTD     L+N++S
Sbjct: 310 NLIPNALNTASVQWFERTLDDSSNRRSLLPEAFLFTDSVLKILLNVIS 357



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 258 IYPETLLWTH*Y*NIILNLMKSQIIQHKNLMKH 356
           + PE  L+T     I+LN++   +I  K + KH
Sbjct: 337 LLPEAFLFTDSVLKILLNVISGMVIYPKVIQKH 369


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +2

Query: 188 LRKINNRNVQDVKTVTRLHLYSINLPRNITLDALVLKHYSKLNEKSDNTT 337
           L  I  RN+ +     +  L + ++P N++ ++L++K Y+  N+ S + T
Sbjct: 662 LNSIYARNLFNTVEQLQSVLPNCHVPSNLSTESLLIKFYTNQNKISADVT 711


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 303 ILNLMKSQIIQHKNLMKHSIITFILFYERASELSANF 413
           I +L+   +I H N+ + S  + + F  R S L+ NF
Sbjct: 131 IASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNF 167


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 7   FSKISKKMCSFILS*ANYKINSVLNKINRRTI*TVVIWKTDIIKNKP 147
           F +I K    +       KI  V  K N+R +  V +W+ +I++N P
Sbjct: 155 FEQIKKSAMRYDRQKQKEKIKMVEQK-NKRNLYLVNVWEREILRNWP 200


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 381 YERASELSANFRTIL*FRCTFTDQRSVYLINILS-C*KFILES 506
           ++   +L   F T+L     FT+  +V L N+LS C  FIL S
Sbjct: 724 FKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHS 766


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 473 YIILLKIYLRKF*RNYLNTKQGQQSMYKLDVNIKVGKGQTA-PVEKY 610
           YI   ++ + K  + Y N +   + M++ D  I+  + QTA PV K+
Sbjct: 251 YISRCRVNIAK--KQYTNVQNEYELMFERDTEIRKAEDQTAVPVAKF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,877
Number of Sequences: 5004
Number of extensions: 52810
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)