Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d04
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    26   3.1  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   3.1  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.1  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   7.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   7.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   7.1  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +3

Query: 342 PQGNGSASGNARRYL*PCRLRSPTAHKSSTTQENRRVKGSPIASFRMQSFNVEIDGLCTS 521
           PQGN        R L    LR    HK  T     R+    I +  +  +N   D L T+
Sbjct: 266 PQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIVSQSIINPGLVKYNPRYDQLLTA 325

Query: 522 DSR 530
            S+
Sbjct: 326 GSQ 328


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 282 VGSLVGSACSRHSSWWSPATPQGNGSASGNA 374
           +G L G       SW++PAT  G G  + NA
Sbjct: 483 LGFLDGHGSVERYSWFAPATELGAGVGNNNA 513


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 291 LVGSACSRHSSWWSPATPQGNGSASGNARRYL*PCRLRSPTAHKSSTTQE 440
           +V ++ + +S++W   T   NG+ S N+         + PT+ KS TT +
Sbjct: 224 IVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSK 273


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 391 PADCAPQPHTRAQLHRRIEELKDR 462
           PAD     H  +QLH  +E LK+R
Sbjct: 70  PADSGVGTHYLSQLHYAVEYLKER 93


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 402 RSPTAHKSSTTQENRRVKGSPIASFRMQSFNVEIDGLC 515
           R  +  KSS+   NR    +   +  M +FNV+++ LC
Sbjct: 99  RQISQDKSSSFSINREACATSSITSLMDTFNVQLNNLC 136


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 411 LGSAVCRVTDIVERFPKRCHF 349
           +G  V RVT  +ERF  +CH+
Sbjct: 273 VGKCVNRVTPYLERFWFKCHY 293


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 354  GSASGNARRYL*PCRLRSPTAHKSSTTQENRRVKGSP 464
            G+  G+A  ++  CRL      ++  T  NR+VKGSP
Sbjct: 1483 GNTKGHAHSWIGFCRLA-----RTRITGVNRKVKGSP 1514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,263
Number of Sequences: 5004
Number of extensions: 42095
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)