Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d04
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 31 0.77
08_01_0060 - 413088-413999 29 2.4
05_03_0485 + 14608663-14608989,14609265-14609535,14609720-146098... 29 2.4
12_01_1083 - 11268130-11268290,11268330-11268585,11268946-11269551 28 4.1
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910... 28 4.1
11_06_0584 - 25220371-25222917 28 5.4
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 28 5.4
11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292 27 7.2
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151... 27 7.2
08_01_1082 - 11073874-11073988,11074072-11074133,11074217-110745... 27 7.2
06_03_0046 - 15852653-15854560 27 7.2
03_06_0569 + 34789286-34790052,34791216-34791512,34791604-347918... 27 7.2
11_04_0023 - 12364211-12365014,12365841-12366019,12366391-12366568 27 9.5
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 379 RRAFPEALPFPCGVAGLHHDEWRLHAEPTNEPTPQFHRHY 260
RRA + +P PCGVA L H+ R PTN ++ + +
Sbjct: 135 RRADEDVVPKPCGVA-LDHEAARTWIYPTNVQVREYQKKF 173
>08_01_0060 - 413088-413999
Length = 303
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = -2
Query: 334 GLHHDEWRLHAEPTNEPTPQ-----FH-RHYCLIPARTRSFFCLMLYHNYHFHHL 188
G HH P P P FH H+ L P+ + S F +H++H HHL
Sbjct: 18 GSHHHPLLFDQPPPPPPPPPPPPLPFHLHHHPLDPSPSSSLFPPPPHHHHHAHHL 72
>05_03_0485 +
14608663-14608989,14609265-14609535,14609720-14609830,
14609870-14610423
Length = 420
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 185 DTVLRITIVVSSLLRNTEHFFYVEKSTTNTHHSINYRIQICNRVTNLLTRRV 30
DTV R+ + SLL +H+FY + NT + R + T LLT ++
Sbjct: 75 DTV-RLRLFPFSLLGRAKHWFYANSAAVNTWDKCSMRGMHTVKETELLTAKL 125
>12_01_1083 - 11268130-11268290,11268330-11268585,11268946-11269551
Length = 340
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 218 VISQLSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTNT 96
+ S ++ +N +R+ + SLL + +FY +TTNT
Sbjct: 63 ICSTYTMKGVNPDAVRLRLFPFSLLGKAKQWFYANFATTNT 103
>03_05_0669 +
26589867-26589927,26590674-26590858,26590950-26591045,
26591128-26591223
Length = 145
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 290 VGRLCVQPPLVVVEPGDSAGKWQRF 364
VG V+ P ++++PGD+ W R+
Sbjct: 37 VGTATVKQPKMILDPGDNFSNWDRY 61
>11_06_0584 - 25220371-25222917
Length = 848
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 418 TRAQLHRRIEELKDRLSRLLE 480
TR QL RRI ELKDR+ + E
Sbjct: 119 TRDQLARRIHELKDRVREISE 139
>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 523 SDVQRPSISTLKLCILKDAIG 461
++VQ PS+STLKL ++ AIG
Sbjct: 938 ANVQNPSVSTLKLIVVYIAIG 958
>11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292
Length = 299
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 206 LSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTNT 96
L + S+ DTV R+ + + SLL + +FY ++ NT
Sbjct: 61 LEICSIPDTV-RLRLFLFSLLGRAKQWFYANRAAVNT 96
>08_02_0855 -
21913291-21913347,21914117-21914211,21915077-21915165,
21915449-21915507,21917872-21918160,21918307-21918398,
21918495-21918621,21918730-21918811,21919265-21919541,
21919647-21919812,21920519-21920847
Length = 553
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 266 SLLFNTGTDAFILLSYVISQLSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTT 102
S ++++G L SY+ + L+ ND V I + + L TE F + S T
Sbjct: 65 SFVYDSGCQTTDLRSYLCERAILAPTNDVVSEINNKMIAQLATTEIFISMASSAT 119
>08_01_1082 -
11073874-11073988,11074072-11074133,11074217-11074505,
11074652-11074743,11074840-11074966,11075075-11075156,
11075611-11075887,11075993-11076158,11076874-11077202
Length = 512
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 266 SLLFNTGTDAFILLSYVISQLSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTT 102
S ++++G L SY+ + L+ ND V I + + L TE F + S T
Sbjct: 65 SFVYDSGCQTTDLRSYLCERAILAPTNDVVSEINNKMIAQLATTEIFISMASSAT 119
>06_03_0046 - 15852653-15854560
Length = 635
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 330 SPATPQGNGSASGNARRYL*PCRLRSPTAHKSSTTQENRRVKGSPIASFRMQSFNVEI 503
+PA P G + G+A R R RSP S + R+ P A+FR+ + +V +
Sbjct: 3 TPAPPGGWDFSPGDAIREEVRLRFRSPVHFSSKFCPTHFRLVDLPRANFRLTNSSVAL 60
>03_06_0569 +
34789286-34790052,34791216-34791512,34791604-34791835,
34792334-34792391,34792800-34792931,34793108-34793246,
34793460-34793622,34793693-34793734
Length = 609
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -2
Query: 415 AVGERSLQGHRYRRAFPE--ALPFPCGVAGLHHDEWRLHAEPTN 290
A GE G R P A P CG+ G+ +E AEP N
Sbjct: 166 AAGELGRHGVRVNCVSPGGVATPLSCGLTGMSPEEMEAAAEPHN 209
>11_04_0023 - 12364211-12365014,12365841-12366019,12366391-12366568
Length = 386
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 176 LRITIVVSSLLRNTEHFFYVEKSTTNTHH 90
+R+ ++ SLL E +FY+ ++T NT +
Sbjct: 150 VRLHLLPFSLLGRAEQWFYINRATVNTRN 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,468
Number of Sequences: 37544
Number of extensions: 277541
Number of successful extensions: 922
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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