Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d04
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical ... 29 2.8
AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical ... 29 2.8
U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone... 28 3.7
AJ505020-1|CAD43602.1| 382|Caenorhabditis elegans alpha-1->3-fu... 28 3.7
AF099917-8|AAC68779.2| 457|Caenorhabditis elegans Hypothetical ... 28 3.7
AC006674-5|AAF39933.2| 382|Caenorhabditis elegans Fucosyl trans... 28 3.7
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 4.8
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 4.8
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 4.8
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 28 4.8
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 4.8
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 4.8
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 4.8
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 4.8
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 4.8
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 27 6.4
U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpa... 27 6.4
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 27 6.4
AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein. 27 6.4
>Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical
protein T20F10.4 protein.
Length = 416
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 242 DAFILL--SYVISQLSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTN 99
D ++LL SY+ ++ +S L+DT L T VS L N F +++T N
Sbjct: 51 DQYLLLHKSYIYMEVQISKLDDTALAETDEVS--LTNNAAMFLFDRATYN 98
>AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical
protein Y26D4A.10 protein.
Length = 546
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 242 DAFILL--SYVISQLSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTN 99
D ++LL SY+ ++ +S L+DT L T VS L N F +++T N
Sbjct: 51 DQYLLLHKSYIYMEVQISKLDDTALAETDEVS--LTNNAAMFLFDRATYN 98
>AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical
protein Y40C7B.3 protein.
Length = 416
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 242 DAFILL--SYVISQLSLSSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTN 99
D ++LL SY+ ++ +S L+DT L T VS L N F +++T N
Sbjct: 51 DQYLLLHKSYIYMEVQISKLDDTALAETDEVS--LTNNAAMFLFDRATYN 98
>U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 45 protein.
Length = 525
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 226 CLMLYHNYHFHHLMIRCCELRSLYHRYFVTLNI 128
CL+ + H H IRCC + + R +T+N+
Sbjct: 3 CLVCETDAHGQHFGIRCCRACAAFFRRTLTMNL 35
>AJ505020-1|CAD43602.1| 382|Caenorhabditis elegans
alpha-1->3-fucosyltransferase homologueprotein.
Length = 382
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 47 DWLRDYKFVFDNLLSGVC 100
+W +DY+ +FDN SG C
Sbjct: 323 EWRKDYRVIFDNGFSGWC 340
>AF099917-8|AAC68779.2| 457|Caenorhabditis elegans Hypothetical
protein F54D10.8 protein.
Length = 457
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 205 YHFHHLMIRCCELRSLYHRYFVT 137
Y +H LM++ C LRS YH ++T
Sbjct: 243 YAWHLLMMQDCHLRSKYHSKWIT 265
>AC006674-5|AAF39933.2| 382|Caenorhabditis elegans Fucosyl
transferase protein 4 protein.
Length = 382
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 47 DWLRDYKFVFDNLLSGVC 100
+W +DY+ +FDN SG C
Sbjct: 323 EWRKDYRVIFDNGFSGWC 340
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 400 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 432
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 614 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 646
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 750 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 782
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 799 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 831
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 799 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 831
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 799 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 831
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 791 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 823
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 802 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 834
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 396 RLRSPTAHKSSTTQENRRVKGSPIASFRMQSFN 494
R+RSP+ HKS+ +Q + +P + SF+
Sbjct: 803 RMRSPSTHKSTVSQATKTASSTPQSPSTTTSFD 835
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical protein
M79.1c protein.
Length = 1209
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 338 DSAGKWQRFGKRSTISVTLQTALPNRTQELNYTGESK 448
D K+++ G STI ++ A+P R L G SK
Sbjct: 1029 DITSKFEQLGTASTIESKIEEAVPYREHALEKKGTSK 1065
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical protein
M79.1b protein.
Length = 1214
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 338 DSAGKWQRFGKRSTISVTLQTALPNRTQELNYTGESK 448
D K+++ G STI ++ A+P R L G SK
Sbjct: 1034 DITSKFEQLGTASTIESKIEEAVPYREHALEKKGTSK 1070
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical protein
M79.1a protein.
Length = 1224
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 338 DSAGKWQRFGKRSTISVTLQTALPNRTQELNYTGESK 448
D K+++ G STI ++ A+P R L G SK
Sbjct: 1044 DITSKFEQLGTASTIESKIEEAVPYREHALEKKGTSK 1080
>U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpase
protein 5 protein.
Length = 873
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 197 SSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTNTHHSINYRIQICNRVTNLL 42
S+ ND RI + + L + EH F V ++ N HH ++++ V ++L
Sbjct: 259 SARNDVRARIQDLQTVLGQTREHRFRVLQAAANNHHQWLKQVRMIKTVFHML 310
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 94 CVFVVLFST*KKCSVLRSNDDTTI 165
C+FV++ T + C V SND TI
Sbjct: 857 CLFVIIMETAQACPVCESNDYETI 880
>AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein.
Length = 873
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 197 SSLNDTVLRITIVVSSLLRNTEHFFYVEKSTTNTHHSINYRIQICNRVTNLL 42
S+ ND RI + + L + EH F V ++ N HH ++++ V ++L
Sbjct: 259 SARNDVRARIQDLQTVLGQTREHRFRVLQAAANNHHQWLKQVRMIKTVFHML 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,044,983
Number of Sequences: 27780
Number of extensions: 249604
Number of successful extensions: 726
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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