Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21d02
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 104 1e-23
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 67 2e-12
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 52 5e-08
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 35 0.008
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 32 0.055
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 29 0.39
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.2
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 27 1.6
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 2.1
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 3.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 4.8
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 6.3
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 104 bits (249), Expect = 1e-23
Identities = 47/104 (45%), Positives = 62/104 (59%)
Frame = +2
Query: 173 GVLKRITREGEGTETPNQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWK 352
GV K++ G G + P G +++HY GTL +G KFDSS DR PF +G +I W
Sbjct: 2 GVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWD 61
Query: 353 IGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMI 484
GVP M GE LT P+Y YG G P IPPN+TL F++E++
Sbjct: 62 EGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 67.3 bits (157), Expect = 2e-12
Identities = 38/104 (36%), Positives = 57/104 (54%)
Frame = +2
Query: 173 GVLKRITREGEGTETPNQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWK 352
GV+ + G G N G V + Y+G L +G FD + + +PF F LG+ VI W
Sbjct: 258 GVVVTDVKTGSGASATN-GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315
Query: 353 IGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMI 484
+GV M++G +T AYG + S P IP N+TL FE++++
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYG-NQSIPGIPKNSTLVFEVKLV 358
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 52.4 bits (120), Expect = 5e-08
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = +2
Query: 236 VSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYA 415
VS+ Y+G L +G FD + +PF F LG + VI+ W +G+ M+ G + A
Sbjct: 279 VSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337
Query: 416 YGASGSPPKIPPNATLQFEIEMI 484
YG S P IP N+ L F+++++
Sbjct: 338 YG-SKRLPGIPANSDLVFDVKLL 359
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 35.1 bits (77), Expect = 0.008
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 224 QGCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCA 403
+G V+ Y+G+LLDG + F LG DGV+ AW++ V +++ + + C
Sbjct: 1201 EGSRVAQIYLGSLLDGGTKKVLVSPDSSFFVTLGSDGVVRAWQL-VESVR--HISTMRCE 1257
Query: 404 PEYAYG 421
+YG
Sbjct: 1258 CRLSYG 1263
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 32.3 bits (70), Expect = 0.055
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 435 GLPLAP*AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSF 298
G P+ P AYSG+ +TS I TP +PSL Q + SF
Sbjct: 313 GSPIPPTAYSGSSC--ETSQHTIANTPFLAYDRSPSLTNQEAESSF 356
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 459 VAFGGIFGGLPLAP*AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSFL 295
+ F + GGLP G M + F + TP+ H S +P L Q +G+F+
Sbjct: 162 LGFSFLTGGLPSLVVLGFGIISAMIVNFFDSIHTPVVHRSNSPKLNSQKVSGTFI 216
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 324 PKQNSNGSFLSLLESNLVPSSSVPT*CTLTWHPWLGVSVPSPSLVI 187
P +S SF ++ ++++PSSS T T T P+ S PS VI
Sbjct: 191 PPASSTSSFSTITNTSMIPSSSSFT--TTTGSPYYNTSSFLPSSVI 234
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -2
Query: 574 VGTVKTCTSLEDMAQYAFVLGRTKIFQSPINHFNLKLQCCIWRDFWW 434
+G T + +A++ +LG+T +F +H L Q + + W+
Sbjct: 147 IGHALTIAIQDSLARWNRMLGKTVLFLGGFDHAGLSTQSVVEKKLWY 193
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 221 NQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEF 316
N + VH V + +K+ SR NEP EF
Sbjct: 24 NDNASLQVHNVSKSPEYSKYSYSRKNNEPIEF 55
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 368 MKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDWRLEDLSPTKNKGILRHILE 547
+KK + C P S SP N++ + WRL L P + + ++ H+LE
Sbjct: 537 IKKQRLVEQGCEPIRKTDESHSPNSKTDNSSTHKQELYGPWRLLRLLPRETRAVIAHMLE 596
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -3
Query: 408 SGAQVRMQTSPFFIVGTPIFHASIT---PSLPK-QNSNGSFLSLLESNLVPSSS 259
S + V +QTS I+ +PI +S+T S P +S + S+L+PSSS
Sbjct: 547 SNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSSLIPSSS 600
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 219 GVSVPSPSLVIRFRTPRSP 163
G+ +PS LVI F PR P
Sbjct: 321 GLDIPSVQLVINFDLPRDP 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,523
Number of Sequences: 5004
Number of extensions: 64787
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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