Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c22
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   5.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   7.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   9.3  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -1

Query: 535 LFYFKKKFCYDIMLIMVGSALLKR*TIFRTQILTSKANLTCKLKHKKYLQILLKF---PR 365
           L+Y   ++    M+   G   +KR T F  ++      L  +L  KK LQ L KF   P+
Sbjct: 381 LYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPK 440

Query: 364 YVLI 353
            VL+
Sbjct: 441 GVLV 444


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 223 EFADVVNRFASRRARDVLIQKY 288
           E A +VNRF  RR  D+L  KY
Sbjct: 497 ELAKIVNRFIIRRTNDIL-SKY 517


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 450 ELKFSPAKRI*PVN*NTKNICRFY*NSQDMY*YLYVVRSSVRC*III 310
           E+ F P  +   +N    N+  FY +S+ +  YL+++ +S R  +I+
Sbjct: 167 EINFVPLNQTQEIN--GSNLLEFYKDSKHLSRYLHIIANSPRYPVIL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,626
Number of Sequences: 5004
Number of extensions: 53836
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)