Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c22
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 307 INNYSASNGTSH 342
           INN+  SNG SH
Sbjct: 43  INNFETSNGISH 54


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   SSRTTRSVHQLQNA*GI-LQNFNYTTAHYNSFGK 101
           SS + +++H   N       N+NY   +YN++ K
Sbjct: 83  SSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKK 116


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 200 DLFPNHISIALLDSHF 153
           +L P+HI   LLD  F
Sbjct: 635 ELIPSHIMAGLLDKFF 650


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 321 SIERNFALRININTYLGNFNRICKYFLCFNL 413
           S+  N+    N N Y  N+N   K    +N+
Sbjct: 87  SLSNNYNYNNNYNNYNNNYNTNYKKLQYYNI 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,048
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)