Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c19
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1CBD7 Cluster: Rho guanyl nucleotide exchange factor, ...    33   4.3  
UniRef50_Q4S187 Cluster: Chromosome 13 SCAF14769, whole genome s...    33   5.7  

>UniRef50_A1CBD7 Cluster: Rho guanyl nucleotide exchange factor,
            putative; n=7; Eurotiomycetidae|Rep: Rho guanyl
            nucleotide exchange factor, putative - Aspergillus
            clavatus
          Length = 1553

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 278  PSSSGLACGMSLRTPTTQLRPLQNKGSGYSRTSNA 382
            P SSG   G  L TPTTQ RP  + GSG +  S +
Sbjct: 1225 PVSSGNPSGSELMTPTTQPRPQTSHGSGSTARSTS 1259


>UniRef50_Q4S187 Cluster: Chromosome 13 SCAF14769, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF14769, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 435

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 558 LSLGFCQRIPSTRPLNLHPLIPHSMTASLEENC 460
           L++GF     ++  ++LHPL P + T SL ENC
Sbjct: 192 LAVGFLLSAQNSPSISLHPLDPENSTCSLYENC 224


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,181,822
Number of Sequences: 1657284
Number of extensions: 9234339
Number of successful extensions: 24251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24244
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)