Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c19
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    28   1.3  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   5.2  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.1  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   9.1  

>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 501 KDEGLMGVLKGFFDKIRGKGKGADDTTNFNQAPVWR*RKISNED 632
           K+EGL G   GF   + G  +GA     + +  +W+ R+ ++ D
Sbjct: 145 KNEGLRGCYAGFAPSLLGVSQGALQFMAYEKLKLWKQRRPTSLD 188


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 613 RYLQTGAWLKLVVS---SAPFPFPRILSKNPFN 524
           +YL TGAW+ ++++    AP P  R+   N  N
Sbjct: 411 KYLFTGAWIAMLLTFDKCAPVPVKRVFLLNRVN 443


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 561 SLSLGFCQRIPSTRPLNLHPLIPHSMTASLEENCPV 454
           SLS    Q +PST   +L P +  SMT S  E  P+
Sbjct: 651 SLSSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPL 686


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 347  NKGSGYSRTSNASEQR*VRRARPSYGVFRSKSKQSR 454
            N G   S+ +N S++R  +  R S+G  R +S  +R
Sbjct: 977  NSGEEVSKDNNVSQERGSQFLRSSHGRSRERSTSAR 1012


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 625 FDIFRYLQTGAWLKLVVSSAPFPFPRILSKNPFNT-PIK 512
           +DI+RYL  G   ++VV SA  P   +   N F T P++
Sbjct: 185 YDIYRYLPPGT--QVVVVSATLPQDVLEMTNKFTTNPVR 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,397
Number of Sequences: 5004
Number of extensions: 38427
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)