Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c18
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   3.8  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   5.1  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   6.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   8.9  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 474 VFYFEQWYIPSRSHKVIILFHCSIF*YVLLTISLCNLVRTKIEV-FIF 334
           V+YF  W++    ++  ILF  S F   LL I L     +K+ V F+F
Sbjct: 303 VWYFPLWHMGISGYEACILFELSPF---LLGIPLLRKFASKVPVIFLF 347


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 235 YHTLLVKVFQAAL*YSDQCIFYFYLHFV 152
           + T LV+VFQ    +    +FY + HF+
Sbjct: 110 FDTFLVRVFQFCAFFFGGIVFYIFNHFL 137


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  FKEFCPRIIVQKYLPIRSVQYKMKIKIKYAL 184
           + +F  + ++++ LP+RS+  K+ I +  AL
Sbjct: 84  YAKFLEKYLIEEELPVRSILKKLGINLPSAL 114


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -3

Query: 507 IFVGCLQRKFFVFYFEQWYIPSRSHKVIILFHCSIF*YVLLTI 379
           +F+GC      +F+F     P   H ++ +   + F + LL +
Sbjct: 419 LFIGCFLLPISMFWFAWTCYPHHIHWIVPIIASAFFGFSLLIV 461


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 454 VYSQSEPQSNHPLSL*HFLICPFDNFLV 371
           VY  S+P     +SL HFL+    +FL+
Sbjct: 293 VYKTSKPSPYAKISLLHFLLTESKHFLI 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,592
Number of Sequences: 5004
Number of extensions: 41199
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)