Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c18
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0478 + 17621678-17623768                                         28   5.1  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 27   8.9  

>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 79  NRATIQRILSKNYCSKVPSNPVSTVQNE 162
           +RAT+QR++ K   SKVP      V+NE
Sbjct: 622 DRATVQRVMKKRGLSKVPGWSWIEVKNE 649


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 263 SSKTFIPFGVSYFTSESLSSSVI----VLGSMHILFLSSFCTVLTGLEGT 126
           SS     F  ++FT  S S +++     +GS+  +FLSSF T+     GT
Sbjct: 337 SSSPTTAFEPNFFTKLSYSMTLVRYPQAIGSLVAVFLSSFATMCIFTSGT 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,518
Number of Sequences: 37544
Number of extensions: 199450
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)