Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21c16
(556 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical... 31 0.74
AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical... 31 0.74
AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical... 31 0.74
AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid... 31 0.74
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 29 3.0
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 29 3.0
AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical ... 28 3.9
U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal enha... 27 6.9
AF022980-1|AAG24194.1| 346|Caenorhabditis elegans Serpentine re... 27 9.1
>AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical
protein Y37D8A.23c protein.
Length = 433
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 217 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 396
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 205 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 264
>AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical
protein Y37D8A.23b protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 217 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 396
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 280 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 339
>AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical
protein Y37D8A.23a protein.
Length = 508
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 217 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 396
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 280 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 339
>AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid
decarboxylase protein.
Length = 508
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 217 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 396
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 280 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 339
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 322 TWRC--ARSYQKAERCQV-ALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQV 471
+WRC A+ + C+ A D + +GSHNHP ++ ++ E K Q+
Sbjct: 83 SWRCVCAKKMHDGQWCKCRAETTMDNKNACTKGSHNHPPRHHVAEIEFIKSQL 135
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 322 TWRC--ARSYQKAERCQV-ALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQV 471
+WRC A+ + C+ A D + +GSHNHP ++ ++ E K Q+
Sbjct: 81 SWRCVCAKKMHDGQWCKCRAETTMDNKNACTKGSHNHPPRHHVAEIEFIKSQL 133
>AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical
protein T28C12.6 protein.
Length = 333
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 527 NNCPSSLXRRAACTDAIGSTWNFLDS-CLEGLY 432
+ CP C A GS W + DS C GLY
Sbjct: 298 DQCPDPYQLGVKCVAARGSNWCYTDSDCRSGLY 330
>U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform b protein.
Length = 169
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 322 TWRC--ARSYQKAERCQV-ALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQVDPMASVQ 492
+WRC A+ + C+ A D + +GSHNHP ++ ++ E K + + + Q
Sbjct: 83 SWRCVCAKKMHDGQWCKCRAETTMDNKNACTKGSHNHPPRHHVAEIEFIKVRGE-ITQSQ 141
Query: 493 AARL 504
+RL
Sbjct: 142 LSRL 145
>AF022980-1|AAG24194.1| 346|Caenorhabditis elegans Serpentine
receptor, class h protein36 protein.
Length = 346
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 77 LYCAKLNVNFHLLKPLIQANDACSYLIILIGIDI---FANTGLLYKL--N*IAKEVGSTS 241
L+ +L + F L +P + C LI+ + + I + ++++L AK
Sbjct: 114 LFTGRLLLIFDLYRPTLSFKRKCCELIVYLIVAILGFWVTPMMIFQLPEQNSAKLKVMMI 173
Query: 242 DQLAAVCTWSPTDIYFTKTE 301
+Q C WSPT I T E
Sbjct: 174 EQFYPDCLWSPTAIIVTSAE 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,364,190
Number of Sequences: 27780
Number of extensions: 254950
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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