Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c15
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    31   0.15 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   0.78 
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   1.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   3.2  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   3.2  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    26   3.2  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   4.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   4.2  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   5.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   7.3  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    25   7.3  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 3   IDLELVKNSITHAKLLVKNCKRKGL-SKMESNDFR 104
           ID  +  NS+TH  LL+K C  K L S ++ NDF+
Sbjct: 656 IDYLVKSNSVTHRALLLKLCVNKLLGSLLDHNDFK 690


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -1

Query: 314 YFMNSALRAIKAASLSWCRWNQFRWVSLRVYSFFCKRIDLFVDSLMFHFHIDSCKPVSFL 135
           +F   A   I A     C W      ++ V    CK IDL  DS + H +  +   +S+ 
Sbjct: 182 FFEEIADACISALPQDACLWAMEVCNTILVSDLPCKLIDLHNDSFLHHSNYYAGFGLSYY 241

Query: 134 LFLS 123
           L+LS
Sbjct: 242 LYLS 245


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +3

Query: 15  LVKNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKEEEKGDRFARINMEVKHQAIDE 194
           ++  ++    L V+ C       M+ +D   YF+ +++ +    +F+ ++ E+  Q  +E
Sbjct: 101 ILPKTLIRFSLTVEECTNPEYC-MDEHDTE-YFLKLKQAQPSLSKFSELDFEIVMQTFEE 158

Query: 195 QIN 203
           +IN
Sbjct: 159 EIN 161


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 209 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHCS 307
           ++++C H   P  +  +GTK         +HCS
Sbjct: 198 HEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCS 230



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 209 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHCS 307
           ++++C H   P  +  +GTK         +HCS
Sbjct: 393 HEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCS 425



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 209 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHCS 307
           ++++C H   P  +  +GTK         +HCS
Sbjct: 310 HEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCS 342



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 209 YKKNCIHADLPNEIDSSGTKKGXXXXXXXKHC 304
           ++++C H   P  I  +GTK         +HC
Sbjct: 283 HEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHC 314


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 143 RQVCKNQYGSETSSYRRTNQSVYKKNCIHADLPNEIDSSGTK 268
           +++ K  Y S++SS    ++ + K    +AD+P E+D++ TK
Sbjct: 270 QELTKATYVSQSSSISSEDEEIAK----NADVPAEVDNNSTK 307


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 466 PYLICLQSYKYLAQYLSLDLNLGNNI 543
           P L+ ++   Y+A+ LSL + LG NI
Sbjct: 164 PLLVLIEFVSYIARGLSLGIRLGANI 189


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 21  KNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKEEEKGDRFARINMEVK 176
           K + T  K++ ++ KR+     ++ D +P   + +++ EKGD+   ++  VK
Sbjct: 624 KRTKTVEKIMDESRKRRSNQLEQTQDGKPELKIKKRKAEKGDQRQELDRIVK 675


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 369 CFFLRDIRIPVLHNY*LNIFYEQCFKSNKSSKPFLVP 259
           C  LRDIR  + +     I    C K    S P+L+P
Sbjct: 371 CDALRDIRFRLAYPECFQIISSLCDKLGPHSDPYLIP 407


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 102 RPYFILIRKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKLI 254
           R YF++ + E  +       N++ K+   DE  NP+  + +Y +  P KL+
Sbjct: 140 RIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPY--QVLYDRLGPLKLM 188


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 114 ILIRKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKL 251
           I I+ +EE+  R A I  E++   + E+     K   YT+   + L
Sbjct: 356 ISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNL 401


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 396 GEESW*CSWNVNKNINLPQDVYK 464
           G+E +  SWN++K+++ P +V K
Sbjct: 38  GQECFRNSWNIHKHLHRPPNVEK 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,234
Number of Sequences: 5004
Number of extensions: 46429
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)