Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c15
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z74043-12|CAA98548.1|  503|Caenorhabditis elegans Hypothetical p...    28   3.8  
Z74040-7|CAA98515.1|  503|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   5.0  
Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    27   6.7  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    27   6.7  
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    27   6.7  
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    27   6.7  
AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    27   8.8  

>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = -1

Query: 374 SSVFFLEISAFLFCITTN*IYFMN---SALRAIKAASLSWCRWNQFRWVSLRVYSFFCKR 204
           SS+FF ++  FL+ +    + F N   ++L + +  +L +C+       S+    + C +
Sbjct: 368 SSLFFWKLLTFLYLLLQTIVIFPNYSKTSLLSFRECNL-YCQTTSLTIFSIFFLVYSCIQ 426

Query: 203 IDLFVDSLMFHFHIDSCKPVSFLLFL 126
             LFV  +++ F  ++   +S  LFL
Sbjct: 427 SSLFVGIVLWSFKSEAMFQISLNLFL 452


>Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical
           protein B0331.1 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 405 SW*CSWNVNKNINLPQDVYKSVLNLF 482
           SW C WN+  N  + ++VYK ++++F
Sbjct: 319 SWLC-WNIAHNPEVQENVYKEIISIF 343


>Z74043-12|CAA98548.1|  503|Caenorhabditis elegans Hypothetical
           protein T19B10.1 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 405 SW*CSWNVNKNINLPQDVYKSVLNLF 482
           SW C WN+  N N+ + VYK ++ +F
Sbjct: 320 SWAC-WNLAHNPNVQEKVYKEMIEVF 344


>Z74040-7|CAA98515.1|  503|Caenorhabditis elegans Hypothetical
           protein T19B10.1 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 405 SW*CSWNVNKNINLPQDVYKSVLNLF 482
           SW C WN+  N N+ + VYK ++ +F
Sbjct: 320 SWAC-WNLAHNPNVQEKVYKEMIEVF 344


>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 110 LYTDQKGRGERRQVCKNQYGSETSSYRRTNQSVYKKNC 223
           LY D+ G+ E+++  + Q+  E   ++RT    Y+  C
Sbjct: 380 LYLDRTGQLEKQREKRKQWAEEGFGHKRTETDTYESLC 417


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 532 PNLNPKKDT----VLNICMIVNKLSTDL*TSCGKLIFL 431
           P +N KKDT    V  IC + +K  T L T C K + L
Sbjct: 228 PEINQKKDTKQVHVCPICTLASKNGTCLCTKCQKWVHL 265


>Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 RNADISKKKTLLHLLCIVWAKSLGNALGTSIRI-LTCHKM 456
           R  D+ +  TL HL  +  +  L NAL T+IR+ L+C+K+
Sbjct: 213 RAQDLEELFTLKHLNVLDMSIRLKNALQTNIRVFLSCNKV 252


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 RNADISKKKTLLHLLCIVWAKSLGNALGTSIRI-LTCHKM 456
           R  D+ +  TL HL  +  +  L NAL T+IR+ L+C+K+
Sbjct: 78  RAQDLEELFTLKHLNVLDMSIRLKNALQTNIRVFLSCNKV 117


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 145 TGLQESIWK*NIKLSTNKSIRLQKKLYTRRLTQRN 249
           T LQ S WK    ++TNK++  + + +TR+  +RN
Sbjct: 113 TALQNSSWK---IVNTNKNLECRARCHTRKSDRRN 144


>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 179 MFHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFP 66
           +F   ID CKP SF+   S    +W   I ++   T P
Sbjct: 233 LFQRRIDGCKPRSFINNYSKMNNIWNSSIDINSTKTLP 270


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 426 VNKNINLPQDVYKSVLNLFTIIQIFSTVSFFGFK 527
           + K +N+P D YK+VL L  + +    +++F ++
Sbjct: 415 LTKLLNIPIDEYKNVLRLSQLPEYIKVMNYFDYR 448


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 426 VNKNINLPQDVYKSVLNLFTIIQIFSTVSFFGFK 527
           + K +N+P D YK+VL L  + +    +++F ++
Sbjct: 420 LTKLLNIPIDEYKNVLRLSQLPEYIKVMNYFDYR 453


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 RNADISKKKTLLHLLCIVWAKSLGNALGTSIRI-LTCHKM 456
           R  D+ +  TL HL  +  +  L NAL T+IR+ L+C+K+
Sbjct: 213 RAQDLEELFTLKHLNVLDMSIRLKNALQTNIRVFLSCNKV 252


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 179 MFHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFP 66
           +F   ID CKP SF+   S    +W   I ++   T P
Sbjct: 233 LFQRRIDGCKPRSFINNYSKMNNIWNSSIDINSTKTLP 270


>AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical
           protein C23H5.11 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 371 SVFFLEISAFLFCITTN*IYFMNSALRAIKAASLSWCRWNQ 249
           ++F   IS    C T   +  +N   R  + +S+SW  W +
Sbjct: 100 ALFHFVISTLCLCFTIRLLLLLNCIRRCRRWSSVSWVAWQK 140


>AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical
           protein F35F11.1 protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 200 DLFVDSLMFHFHIDSCKPVS 141
           D+F     FHFH+D  KPV+
Sbjct: 468 DIFTHIPAFHFHVDQDKPVA 487


>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = +3

Query: 3   IDLELVKNSITHAKLLVKNCK--RKGLS---KMESNDFRPYFILI 122
           IDL LV++ ++  + LVK C+  R  LS   K E+N+F  +  +I
Sbjct: 198 IDLPLVQDVVSALRRLVKECRSLRSELSIDRKSEANEFSLFITII 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,319,025
Number of Sequences: 27780
Number of extensions: 250229
Number of successful extensions: 705
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)