Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c15
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 524 KSKERYCAKYLYDCKQIKYGFVDILWQVN 438
           K K ++  ++  +CK  + GF+   W ++
Sbjct: 142 KEKAKFPQEFFPECKWSRKGFLRTRWSIS 170


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 203 IDLFVDSLMFHFHIDSCKPVSFLLFLSDQ 117
           + L V +L+  FHI    P S    LSD+
Sbjct: 81  VSLQVANLLRLFHIPQISPASTAKALSDK 109


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -3

Query: 84  FLINLSFCNF*LIILRGLYYF 22
           F++NL+ C+F ++I   ++ +
Sbjct: 86  FVVNLAICDFFMMIKTPIFIY 106


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 203 IDLFVDSLMFHFHIDSCKPVSFLLFLSDQ 117
           + L V +L+  FHI    P S    LSD+
Sbjct: 171 VSLQVANLLRLFHIPQISPASTAKALSDK 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,677
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)