Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21c14
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.4
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 2.4
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 4.2
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 5.6
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 25 5.6
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 7.3
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 7.3
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 9.7
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ... 25 9.7
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.7
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.7
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 9.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.7
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 467 PKTLRILVSWDACKRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIA-----PASLNAAR 306
PK +IL+ + + + YGN + LSR D +SG + ++A PAS N A+
Sbjct: 2650 PKA-KILIGKELLRHGQEYGNSITNDLSRLCADVKSGKNESELQVALAPFCPASSNQAK 2707
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 374 AQNEIDIVNARFRNGDPVYKHPMIPGYEGFSG 469
+ E I A N D Y P IP Y GFSG
Sbjct: 329 SDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 318 QRGW-CYPIERPMTSRSTVQHRTR 386
++GW CYP R RS + RTR
Sbjct: 144 EKGWLCYPCSRGAEDRSVPELRTR 167
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 206 PHYIPGYTGHCPEYKYRIGDTYGST 280
P YIPG+T ++ GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 487 KAVRHMTRKPFVSWYHGMLVNGIAITETCVHDV 389
K +R + P SW+ GML+ G + + V D+
Sbjct: 34 KKIRVFEKLPTFSWHEGMLIPGSNMQISFVKDL 66
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 374 LDGRSGSHRPFYRIAPASLNAARSDREGSCVLSSHTYRRSD 252
LD + Y IA L + D+E SC++ S + R D
Sbjct: 152 LDDSLDVKKTIYTIAIKYLENSGIDKEASCLVLSRLFSRDD 192
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 195 LTKSRAIVNFKKKYFWPNSYV 133
LTKS +IV F+K YF +Y+
Sbjct: 333 LTKSSSIVAFEKLYFLNKNYL 353
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 356 FQIYRPAQNEIDIVNARFRNGDPVY 430
F+ AQN ID +N+R+ + PVY
Sbjct: 111 FKYEESAQNAIDDLNSRWYSQRPVY 135
>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 99 NIDYLFSCKRCLRHCSFDNDHGNVSDTE 16
N YLF +CLRH S ++ +V + E
Sbjct: 165 NFVYLFELAKCLRHLSPESKDIHVFELE 192
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 355 LPDLPSSTERDRHRE 399
LPDLP S+E DR+ E
Sbjct: 140 LPDLPQSSEVDRNSE 154
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 377 VLDGRSGSHRPFYRIA 330
+LD +S HRP YRIA
Sbjct: 1343 ILDKQSWHHRPTYRIA 1358
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 133 YITIRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVS 255
Y + R I S + +RP ++S H SLS V VS
Sbjct: 17 YASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVS 57
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 106 FLNSKLCFNYITIRPKIFFFEIYNGSGFSQYRPTALY 216
FL + F +T + FFE+ G GFS +RP +Y
Sbjct: 530 FLTNIKPFEAVTFQK--LFFEV--GKGFSYFRPEQVY 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,427
Number of Sequences: 5004
Number of extensions: 54020
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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