Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c14
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   5.6  
01_01_0018 + 139150-140415                                             28   5.6  
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    27   7.5  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    27   9.9  
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    27   9.9  
05_01_0576 - 5130589-5131995                                           27   9.9  

>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 142 IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 315
           + P +F   +Y G       P+   S    S  R Q++    +WL   Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440


>01_01_0018 + 139150-140415
          Length = 421

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +3

Query: 183 WI*SVSPNRIIFLGTRV---IVPSTSIGSAIRMARQHTRSFSIRACS-IQRGWCYPIERP 350
           W  + S NR I L T +   I  + S    + +   H        CS +    C  +++P
Sbjct: 86  WASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQP 145

Query: 351 MTSRSTVQHRTR*TS*THVSVMAIPFT 431
            TSR   QH+    + T+    AIP T
Sbjct: 146 STSRPPYQHQLPLFAPTYTP--AIPIT 170


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 422 PVYKHPMIPGYEGFSGHVPYGFQRFGESSKK 514
           P Y HP I   E  +  +P  F++ GE+ K+
Sbjct: 266 PCYHHPEIQELEFKNSSLPSSFRKLGETEKR 296


>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 341 YRIAPASLNAARSDREGSCVLSSHTYRRSDTCTRDNDPCTQEYNAVGR 198
           YRIA     A   + E    L +H Y+R+ T  R+  PC  E    GR
Sbjct: 216 YRIAKQVSEAL--ELESLDYLYAHKYQRTRTDHRETSPCQSEPKVHGR 261


>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 167 KFTMALDLVSIAQPHYIPGYTGHCPEYKYRI 259
           +F M ++L+S  +  Y+ G  GHC E  +R+
Sbjct: 169 EFEMEVELLSRLRSPYLLGLIGHCSEGGHRL 199


>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 229 GSLSRVQVSDRRYVWLDNTQDPSRSERAAFREA 327
           G   RV V +R   W D  +DP+    A FR A
Sbjct: 102 GGGRRVWVRERSTEWWDRMRDPAACPEAEFRRA 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,394
Number of Sequences: 37544
Number of extensions: 332709
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)