Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21c10
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 160 1e-40
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 112 4e-26
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 103 1e-23
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 100 3e-22
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 87 2e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 84 1e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 83 3e-17
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 83 3e-17
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 78 1e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 73 2e-14
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 73 4e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 72 5e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 72 7e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 71 2e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 70 2e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 69 4e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 4e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 69 7e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 66 3e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 3e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 1e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 5e-09
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 51 1e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 48 1e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 48 1e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 48 1e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 2e-06
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 46 3e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 44 1e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 37 0.002
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 30 0.21
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 30 0.28
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 1.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 2.6
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 27 2.6
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 27 2.6
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 27 2.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 3.5
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 4.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.1
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 6.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 8.1
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 8.1
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 160 bits (389), Expect = 1e-40
Identities = 73/144 (50%), Positives = 103/144 (71%)
Frame = +2
Query: 143 PKVVDITAQNLGAAETLTESRITCSVQHKDAYLYYVLKRHPGRTIVFCNSIGCVQRLAQL 322
PK +D Q+ A+ L E I C+ KD YLYY++ R+PG+T+VF N I ++R+
Sbjct: 350 PKFLDANPQSAVASRVL-EGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPF 408
Query: 323 FGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPR 502
LK PLHA + Q++RL++LE+F+++ GVL+ TDVAARG+DIP V HV+HY VP
Sbjct: 409 LNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPH 468
Query: 503 TAESYVHRSGRTARASKEGLTILM 574
TA+ YVHRSGRTARA+++G++ILM
Sbjct: 469 TADMYVHRSGRTARANEDGVSILM 492
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 112 bits (269), Expect = 4e-26
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Frame = +2
Query: 92 TSQQKINRLVKMIGMTDPKVVDITAQNLGAAETLTESRITCSVQHKDAYLYYVLKRHPGR 271
T K+ +L + + P V ++++ +TL + + +HKD YL Y++ G
Sbjct: 229 TMTSKVEKLQRA-SLHQPVRVAVSSK-FSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGN 286
Query: 272 TIV-FCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAA 448
+I+ F ++ QRLA L L +PLH + Q RL L +F+ L+ATDVAA
Sbjct: 287 SIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAA 346
Query: 449 RGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMM 577
RGLDIP VD V++Y +P +++Y+HR GRTARA + G +I ++
Sbjct: 347 RGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALV 389
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 103 bits (248), Expect = 1e-23
Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Frame = +2
Query: 155 DITAQNLGAAETLTESRITCSVQHKDAYLYYVL---KRHPGRTIVFCNSIGCVQRLAQLF 325
++ N+ TL +S I S Q ++AYL ++L + I+F N + + +
Sbjct: 219 EVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSIL 278
Query: 326 GILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRT 505
+L+ LH+ M QR+R+ +L RFR + +L+ATDVA+RGLDIP V V+++ +PR
Sbjct: 279 RLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRD 338
Query: 506 AESYVHRSGRTARASKEGLTI 568
+ Y+HR GRTARA + G +I
Sbjct: 339 PDDYIHRVGRTARAGRSGESI 359
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 99.5 bits (237), Expect = 3e-22
Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +2
Query: 92 TSQQKINRLVKMIGMTDPKVVDITAQNLGAAETLTESRITCSVQH---KDAYLYYVLKR- 259
T K++ L+++ + P V + + A+ LT+ + Q + A L Y+ K
Sbjct: 445 TMTDKVDDLIRL-SLNRPVRVFVDNKKT-TAKLLTQEFVRVRPQRELLRPAMLIYLCKEL 502
Query: 260 HPGRTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATD 439
RTI+F S ++ +FG+L + +H ++ Q QR++ LE FRD K L+ATD
Sbjct: 503 FHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATD 562
Query: 440 VAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILM 574
VA+RG+DI ++ V++Y+ P T E Y+HR GRTARA + G I +
Sbjct: 563 VASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITL 607
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 87.0 bits (206), Expect = 2e-18
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Frame = +2
Query: 92 TSQQKINRLVKMIGMTDPKVVDI-TAQNLGAAETLTESRITCSVQHKDAYLYYVLKRH-P 265
T K+ L ++ P V++ + + E L + + + L+ LKR+
Sbjct: 277 TQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK 336
Query: 266 GRTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVA 445
+ IVF +S V+ +A+L + L LH +Q++R F + + G+L+ T+VA
Sbjct: 337 KKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVA 396
Query: 446 ARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASK 553
ARGLDIP VD +V Y P Y+HR GRTAR +K
Sbjct: 397 ARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTK 432
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 84.2 bits (199), Expect = 1e-17
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Frame = +2
Query: 182 AETLTESRITCSVQHKDAYLYYVLKRHP--GRTIVFCNSIGCVQRLAQLFGILKCHPLPL 355
+E +T+ + K +YL +L P G T++F + L +
Sbjct: 401 SENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSI 460
Query: 356 HANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGR 535
H + QR+R + LE FR + +++AT VA+RGLDIP+V HV++Y +P + YVHR GR
Sbjct: 461 HGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGR 520
Query: 536 TARASKEGLTI 568
T RA G +
Sbjct: 521 TGRAGNTGQAV 531
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 83.0 bits (196), Expect = 3e-17
Identities = 37/101 (36%), Positives = 60/101 (59%)
Frame = +2
Query: 275 IVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARG 454
I+F N ++ +A+ + H + LH + Q QR + +E+ R+ +L+ATD+A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 455 LDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMM 577
+DIP+V V++Y + ++ E Y HR GRT RA K G I +
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFL 620
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 83.0 bits (196), Expect = 3e-17
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Frame = +2
Query: 134 MTDPKVVDITAQNLGAAETLTES-RITCSVQHKDAYLYYVLKRH---PGRTIVFCNSIGC 301
+ DP + I + L A++ +T+ I + K+ L +L++H G+ +
Sbjct: 367 LKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLY 426
Query: 302 VQRLAQLFGIL--KCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVD 475
+ A++ G L K + + +H +M Q RL+ L F+ K VL+ATDVAARGLDIP V
Sbjct: 427 KKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQ 486
Query: 476 HVVHYQVPRTAESYVHRSGRTARASKEGLTI 568
V++ P T E YVHR GRT RA+ +G I
Sbjct: 487 LVINVTFPLTIEDYVHRIGRTGRANTKGTAI 517
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 77.8 bits (183), Expect = 1e-15
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Frame = +2
Query: 95 SQQKINRLVKMIGMTDPKVVDITAQNLGAAET-LTESRITCSVQHKDAYLYYVLKRH-PG 268
+Q K + + + + +P + + + + + L + +T + K L+ ++ H
Sbjct: 225 TQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKF 284
Query: 269 RTIVFCNSIGCVQRLAQLFGILK--CHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDV 442
+TIVF +S V+ + + F ++ L LH +Q R + +F +H VL TD+
Sbjct: 285 KTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDI 344
Query: 443 AARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMM 577
ARGLD P VD V+ P ++Y+HR GRTAR ++ G +L++
Sbjct: 345 VARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLL 389
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 73.3 bits (172), Expect = 2e-14
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKC--HPLPLHANMQQRQRLKNLERFR-DDKHGVLIATD 439
+ IVF +S V+ LF K + LH Q R +N E+F+ +K VL TD
Sbjct: 258 KAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTD 317
Query: 440 VAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMM 577
+A+RGLDIP+VD V+ P +S+ HR GR RA + G+ I+++
Sbjct: 318 IASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLL 363
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 72.5 bits (170), Expect = 4e-14
Identities = 34/100 (34%), Positives = 55/100 (55%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAA 448
+ ++FCNS V L + +H M Q++R ++ FR VLI TD+ A
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 449 RGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTI 568
RG+D+ V V++Y +P E+Y+HR GR+ R ++G+ I
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAI 361
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 72.1 bits (169), Expect = 5e-14
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKCH-PLP---LHANMQQRQRLKNLERFRDDKHGVLIAT 436
R IVF +I V + G+L+ H +P LH+ + QR E FR + G+L AT
Sbjct: 294 RIIVFLPTISMVDFVG---GVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFAT 350
Query: 437 DVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMM 577
DV ARG+D P++ VV P + Y+HR GRT RA K G L++
Sbjct: 351 DVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLIL 397
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 71.7 bits (168), Expect = 7e-14
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 353 LHANMQQRQRLKNLERF---RDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVH 523
LH ++ Q+ R L F D +L+ TDVAARGLD+P+VD VV Y P + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 524 RSGRTARASKEGLTILMM 577
R GRTARA G I+ +
Sbjct: 533 RIGRTARAGHNGAAIMFL 550
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 70.5 bits (165), Expect = 2e-13
Identities = 32/100 (32%), Positives = 55/100 (55%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAA 448
+ ++F S+ L +L + +H + Q +R+K + F+D + +ATDV
Sbjct: 297 QVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFG 356
Query: 449 RGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTI 568
RG+DI V+ V++Y +P + +SY+HR GR R +GL I
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAI 396
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 70.1 bits (164), Expect = 2e-13
Identities = 35/104 (33%), Positives = 53/104 (50%)
Frame = +2
Query: 248 VLKRHPGRTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVL 427
VLK + ++F + + + L +H + Q +R L FR K ++
Sbjct: 364 VLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIM 423
Query: 428 IATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEG 559
+ATDVA+RG+D+ + HV +Y P E YVHR GRT RA +G
Sbjct: 424 VATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKG 467
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 69.3 bits (162), Expect = 4e-13
Identities = 33/100 (33%), Positives = 54/100 (54%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAA 448
+ ++FCN+ V L + +H +M Q QR + FR +LI TD+ A
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Query: 449 RGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTI 568
RG+D+ V V++Y +P E+Y+HR GR R ++G++I
Sbjct: 320 RGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSI 359
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 69.3 bits (162), Expect = 4e-13
Identities = 35/99 (35%), Positives = 57/99 (57%)
Frame = +2
Query: 263 PGRTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDV 442
P T+VF + V+ +++L ++ ++ Q RL + FR K +L+ TDV
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDV 405
Query: 443 AARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEG 559
A+RG+DIP + +V++Y P + +VHR GRTARA + G
Sbjct: 406 ASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTG 444
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 68.5 bits (160), Expect = 7e-13
Identities = 36/100 (36%), Positives = 55/100 (55%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAA 448
++I+FCNS V+ LA+ L HA M Q R + FR+ L+ +D+
Sbjct: 283 QSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLT 342
Query: 449 RGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTI 568
RG+DI V+ V+++ P+ AE+Y+HR GR+ R GL I
Sbjct: 343 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAI 382
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 66.5 bits (155), Expect = 3e-12
Identities = 34/100 (34%), Positives = 53/100 (53%)
Frame = +2
Query: 269 RTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAA 448
R ++F I + L + H +H + Q +R + L +FR + VLIATD+ A
Sbjct: 290 RVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLA 349
Query: 449 RGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTI 568
RG+D V V+++ P++ SY+HR GRT RA G +
Sbjct: 350 RGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAV 389
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/74 (35%), Positives = 47/74 (63%)
Frame = +2
Query: 359 ANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRT 538
+++ + +R K + RF +L+ +D+ ARG+D+ + +V++Y P + SYVHR GRT
Sbjct: 469 SSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRT 528
Query: 539 ARASKEGLTILMME 580
ARA +EG +++
Sbjct: 529 ARAGREGFAWTLVQ 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.3 bits (142), Expect = 1e-10
Identities = 29/72 (40%), Positives = 38/72 (52%)
Frame = +2
Query: 353 LHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSG 532
+H Q R + ++ VLIAT V ARGLD+ + VV+Y P E YVHR G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 533 RTARASKEGLTI 568
RT RA G+ +
Sbjct: 758 RTGRAGHTGVAV 769
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 55.6 bits (128), Expect = 5e-09
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Frame = +2
Query: 266 GRTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVA 445
G++I+FC + +A+ L N++ QR ++ FR VL+ T+V
Sbjct: 353 GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI 412
Query: 446 ARGLDIPDVDHVVHYQVP------RTAESYVHRSGRTARASKEGLTI 568
ARG+D+ V+ VV+Y +P ++Y+HR GRT R + G++I
Sbjct: 413 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSI 459
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 362 NMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRT- 538
+M R++ L +F+ K+ VLIAT VA G+D+P + V+ + + RT YV GR
Sbjct: 406 SMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRAR 465
Query: 539 ARASK 553
A ASK
Sbjct: 466 AMASK 470
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 48.0 bits (109), Expect = 1e-06
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +2
Query: 266 GRTIVFCNSIGCVQ----RLAQLFGILKCHPLPLHANMQQRQRLKNLERFRD--DKHGVL 427
GR I+FC + V+ RL Q H ++ +R N + FR+ K ++
Sbjct: 1416 GRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 428 IATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMME 580
IAT G++ V VVHY +P ++ YV +GR R K + L E
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYE 1526
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 48.0 bits (109), Expect = 1e-06
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +2
Query: 266 GRTIVFCNSIGCVQ----RLAQLFGILKCHPLPLHANMQQRQRLKNLERFRD--DKHGVL 427
GR I+FC + V+ RL Q H ++ +R N + FR+ K ++
Sbjct: 1416 GRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 428 IATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMME 580
IAT G++ V VVHY +P ++ YV +GR R K + L E
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYE 1526
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 47.6 bits (108), Expect = 1e-06
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +2
Query: 275 IVFCNS-IGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAAR 451
I++C S C Q A+L HA +++ +R + ++ + +++AT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 452 GLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTIL 571
G+D DV V+H+ P++ E Y +GR R K I+
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIM 845
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.8 bits (106), Expect = 2e-06
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 374 RQRLKNLERFRDDK-HGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARAS 550
+ + K +R + DK +GV ARGLD +V V+++ +P +SY+HR GRTARA
Sbjct: 369 KDKSKKKKRVKQDKEYGV-------ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAG 421
Query: 551 KEG 559
K G
Sbjct: 422 KPG 424
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 46.4 bits (105), Expect = 3e-06
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +2
Query: 365 MQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTAR 544
M Q Q+ + +++FR L+AT + GLDI D D ++ Y + + R GRT R
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
Query: 545 ASKEGLTILMME 580
+ +L+ E
Sbjct: 575 KKSGKVFVLLTE 586
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +2
Query: 359 ANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRT 538
A M Q+ + + +++F+ + LIAT + GLDI +VD ++ Y + + R GRT
Sbjct: 474 AGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRT 533
Query: 539 ARASKEGLTILM 574
R K + +L+
Sbjct: 534 GRKRKGYIYMLL 545
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +2
Query: 365 MQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTAR 544
+Q+R+++++ E F +G+ IAT+ G+DI +D V+ P + + + GR R
Sbjct: 596 VQERRKIES-EMFNGKLYGI-IATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
Query: 545 ASKEGLTILMME 580
+K L + ++E
Sbjct: 654 RNKSSLAVYIVE 665
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 422 VLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEG 559
V +A RGL +P + H+ H + +Y H +GR + G
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTG 519
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 29.9 bits (64), Expect = 0.28
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 344 PLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVV 484
PLPLHA + ++++ + D V+ +T++A + I + +VV
Sbjct: 272 PLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVV 318
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 347 LPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVV 484
LPL++ + ++K + + ++AT+VA + IP++ +VV
Sbjct: 705 LPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVV 750
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 308 RLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVV 484
RL QL + LP+++ M + K + V++AT++A L + + +VV
Sbjct: 723 RLNQLHDAPRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVV 781
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 377 QRLKNLERFRDD-KHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASK 553
+R+K+++R ++ K +L V + D++ +H+Q A VHR+ T+ A
Sbjct: 82 ERIKSVDREQNRIKECLLFVRQVRDFKECLQDLNRAMHHQQWEKAADLVHRASSTSPAII 141
Query: 554 EG 559
EG
Sbjct: 142 EG 143
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 430 YQHTVFVVTEPLQVLQALPLLH 365
YQ TV V ++ ++VLQ L L H
Sbjct: 381 YQRTVHVYSDAMRVLQVLKLFH 402
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 99 CDVILSTFLFNIFPRFVTFLPRMCAGSS 16
CDV +FL+N F R+ TF C G +
Sbjct: 85 CDVFHLSFLYNPFCRY-TFYKHFCGGET 111
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 356 HANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIP 466
HA + + R + E F ++K +LIAT A G++ P
Sbjct: 1427 HAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTP 1463
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 40 QEGDKAREDIKQESGQDDIAAENQ*IGQNDWHDRPQGGR 156
+ GD R + S QDD++ + + ++D + GGR
Sbjct: 489 KRGDNLRREASLSSEQDDLSEDFPPVRESDEQESRSGGR 527
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 134 MTDPKVVDITAQNLGAAETLTESRITCSVQHK 229
M D + +DI Q LG E L++ C ++H+
Sbjct: 471 MFDMQYIDIAEQALGVLERLSKDFGICILEHR 502
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 348 RGWHFRMPNNCANLWTHPMELQNTIVLP 265
+ W F PN A+ W ++ ++I LP
Sbjct: 547 KSWSFEDPNGPASAWVELLDKASSISLP 574
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 450 RAATSVAISTPCLSSRNLSKFFRRCLCCIFAC 355
R V + C N +F CLC IF C
Sbjct: 185 RMMVQVCLYFLCWGEANNVRFVPECLCFIFEC 216
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 8 MVHELPAHMRGKKVTKRGKILN 73
M+H L A RG VT G +LN
Sbjct: 64 MIHTLAAKARGYPVTSFGSLLN 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,394
Number of Sequences: 5004
Number of extensions: 45806
Number of successful extensions: 190
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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