Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21c05
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 0.75
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 28 1.00
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 3.0
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 26 5.3
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 7.0
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 7.0
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 25 7.0
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 9.3
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.3
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 9.3
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 25 9.3
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 28.7 bits (61), Expect = 0.75
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 442 SRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALK 603
S RPT A P+D+ S + SA P + T + +T++ AL+
Sbjct: 593 SSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSVGPALE 646
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 28.3 bits (60), Expect = 1.00
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -2
Query: 451 GADSQPDVFYLAFCTWPIYVRLTHWCFRLTILNLTL--PPTHLMWTLRRGRNSVVQ 290
G D QP F WP Y+RL R ILNL L PP + +N+ Q
Sbjct: 37 GQDIQPKRDLSRFVKWPEYIRLQR---RRKILNLRLKVPPAIAQFQKTLDKNTATQ 89
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 524 GNLGAALPSSSLLKMSIGS 468
GNL A P S LLK+++GS
Sbjct: 201 GNLNARRPQSGLLKITVGS 219
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 424 KKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPK---INDQITITPHIPARTNSTAI 588
KKR S PT + P++I + D L K ND+ + P AR + T++
Sbjct: 671 KKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNNDRSFLVPSRDARNSLTSL 728
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 139 VSRVKNYLAEN---VDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQ 300
+S + YL N ++ T DV Q+ +K+ ++ N ++ EAA KVVL+
Sbjct: 257 LSYLLQYLEGNRSKINATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEKVVLE 313
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 262 RRQCRSYCYTRGTALSENAPFD*HRQT-FCPHFRPNNFLHVTL 137
R R++CY ++E P + R+T + F P+ LH L
Sbjct: 324 RNVARAWCYETSICVNEQIPSELPRETLYYEFFAPDYTLHPRL 366
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 55 LQTILRRNLLEMKKTHNTRQKTLNDPVIVSRVKNY 159
L + R+ +MK +R+ TL DP++V+ + Y
Sbjct: 81 LSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPY 115
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 376 TSALNERILAMYKMQDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLP 525
+S LN K D K R + GE +I S + GSA PK P
Sbjct: 70 SSVLNPWNEDTMKPSDVKMDLWLERMVRRKGEYFEIQSDIDHGSAGPKKP 119
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 490 SDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQQNQPL 621
SD +GS+ + P+ + + T H R+ + + A QN P+
Sbjct: 430 SDNNGSSTQQAPETRNNNSQTDHQLPRSWAIYVREAFVPQNHPV 473
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 85 EMKKTHNTRQ-KTLNDPVIVSRVKNYLAENVDKTFVDVSQMARSLKE 222
++ K N R+ K +N P I+++ ENV K F D + R E
Sbjct: 323 QIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGE 369
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 121 LNDPVIVSRVKNYLAENVDKTFVDVSQMARSLKE 222
L D ++ +V+ EN+ K +VS S+KE
Sbjct: 205 LGDELLKKKVQKEFLENIQKRKEEVSNFLHSIKE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,364
Number of Sequences: 5004
Number of extensions: 48413
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -