Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21c05
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 29 4.1
09_02_0240 - 6157855-6157891,6158040-6158329 28 7.2
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 7.2
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729... 27 9.6
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 27 9.6
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 27 9.6
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 130 PVIVSRVKNYLAENVDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQS 303
P + ++ + + +N + + R L+E Y+E+NN + ++ ++E Y + L S
Sbjct: 423 PTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNDTKSSTSALIETYYFLNLDS 480
>09_02_0240 - 6157855-6157891,6158040-6158329
Length = 108
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = -2
Query: 292 QPCTQLRPSDRRQCRSYCYT---RGTALSENAPFD 197
Q C Q R +QC++YCY G +L FD
Sbjct: 67 QYCDQCRRESNQQCQNYCYNGCLYGCSLQHPCDFD 101
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 219 FQRTRHLTDIDKRFVHIFGQII 154
++RTRHL + +R+VH++ ++
Sbjct: 528 WERTRHLCQLRRRYVHLYATLL 549
>07_01_0879 -
7290890-7291694,7291810-7291943,7292089-7292227,
7292338-7292585
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 478 DILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQ 606
D +SS+ED + PK N Q H PAR + E L Q
Sbjct: 215 DGVSSEEDNNVDEPPPKKNHQEPDDAHAPARDELSVSEHGLVQ 257
>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 148 VKNYLAENVDKTFVDVSQMARSLKERYREYNN 243
+KN +E KT +V + A+ +ERY+E N+
Sbjct: 958 IKNISSEMEGKTEEEVQRYAKVFQERYKELND 989
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 187 QTFCPHFRPNNFLHVTLLRDHSKFFALYCEFSSFPRDFVSVL 62
+++ PN ++ +LRD + FA+YC F +P F +VL
Sbjct: 69 ESYVSLINPNTSVYCGILRDGYEAFAMYC-FGRYPY-FAAVL 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,530
Number of Sequences: 37544
Number of extensions: 312782
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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