Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21c05
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 30 1.6
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 30 1.6
Z81055-7|CAB02897.2| 445|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF016687-4|AAC48097.1| 183|Caenorhabditis elegans Hypothetical ... 28 4.9
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF016438-12|AAK84532.1| 407|Caenorhabditis elegans Nuclear horm... 28 6.5
Z83246-3|CAB05843.2| 292|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 8.6
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 29.9 bits (64), Expect = 1.6
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Frame = +1
Query: 124 NDPVIVSRVKNYLAENVDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQS 303
+DP ++ RV+ ++ + + +A L++ + EY ++ F MV A + + Q
Sbjct: 9 SDPALLPRVQAHIRKFPGTKYFKPELVAYDLQQEHPEYQRKNHKVFMGMVREALERI-QL 67
Query: 304 YGLDGASTXXXXXXXXXXXXXXXNTSALNERILAMYKMQDKKRPAASRRPTDKAGEPIDI 483
+ AL R +K PAA R+ T +A ++
Sbjct: 68 VAKEENDEKMEEKEAMDDVQEIPIVKALETR--------KRKAPAAGRKSTGQAAAAKEV 119
Query: 484 LSSD--EDGSAAPKLPK 528
+ SD ED AA +L K
Sbjct: 120 VLSDDSEDERAARQLEK 136
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 29.9 bits (64), Expect = 1.6
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Frame = +1
Query: 124 NDPVIVSRVKNYLAENVDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQS 303
+DP ++ RV+ ++ + + +A L++ + EY ++ F MV A + + Q
Sbjct: 9 SDPALLPRVQAHIRKFPGTKYFKPELVAYDLQQEHPEYQRKNHKVFMGMVREALERI-QL 67
Query: 304 YGLDGASTXXXXXXXXXXXXXXXNTSALNERILAMYKMQDKKRPAASRRPTDKAGEPIDI 483
+ AL R +K PAA R+ T +A ++
Sbjct: 68 VAKEENDEKMEEKEAMDDVQEIPIVKALETR--------KRKAPAAGRKSTGQAAAAKEV 119
Query: 484 LSSD--EDGSAAPKLPK 528
+ SD ED AA +L K
Sbjct: 120 VLSDDSEDERAARQLEK 136
>Z81055-7|CAB02897.2| 445|Caenorhabditis elegans Hypothetical
protein F01G10.9 protein.
Length = 445
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 424 KKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALK 603
KK A+ P D P++++ S + S ++ Q + T + +NS AIE
Sbjct: 142 KKESHATESPEDSLKVPVEVIESRKPLSPPSSSANVSKQRSYTTSSSSSSNS-AIERYNN 200
Query: 604 QQNQ 615
QQN+
Sbjct: 201 QQNK 204
>AF016687-4|AAC48097.1| 183|Caenorhabditis elegans Hypothetical
protein T21D12.12 protein.
Length = 183
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 57 TNNTETKSLGNEENSQYKAKNFE*SRNSVTCKKLFGRKCGQNVCRCQSNGA 209
T+ + GN Q A++F +N+ TC+ F + C N R QS A
Sbjct: 21 TDCFSARDTGNSGCGQQGARSFYFHKNTRTCQPFFYQGCDGNSNRFQSKEA 71
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 562 PARTNSTAIE-SALKQQNQPLDKKRKL 639
P +T+S++ SA KQ+N P+D+K KL
Sbjct: 450 PRKTSSSSTTTSAKKQKNPPIDEKEKL 476
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 562 PARTNSTAIE-SALKQQNQPLDKKRKL 639
P +T+S++ SA KQ+N P+D+K KL
Sbjct: 518 PRKTSSSSTTTSAKKQKNPPIDEKEKL 544
>AF016438-12|AAK84532.1| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 134 protein.
Length = 407
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 132 RNSVTCKKLFGRKCGQNVCRCQSNGAF 212
R + TC ++FGR C C+ NG F
Sbjct: 36 RRAATCSRIFGR-CPNGNCKLLENGKF 61
>Z83246-3|CAB05843.2| 292|Caenorhabditis elegans Hypothetical
protein ZK795.2 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 424 KKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQI 543
+K P S+ D A I +S E GSA PK K DQ+
Sbjct: 116 EKYPTLSQTDEDLAFTAKIIFNSSETGSAKPKTVKSMDQL 155
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Frame = +1
Query: 439 ASRRPTDKAGEP-----IDILSSDEDGSAAPKL---PKIN-DQITITPHIPARTNSTAIE 591
A + P K +P I LS E S P++ P + + T+T HI A TNS I
Sbjct: 1336 APKVPETKINQPTISSNIGDLSKTEKESTIPRVEVTPSASPESTTVTEHIDAETNSATIP 1395
Query: 592 SALKQQNQPLDKKRKL 639
+ + PL K KL
Sbjct: 1396 T-IGTPPSPLKPKTKL 1410
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,505
Number of Sequences: 27780
Number of extensions: 283753
Number of successful extensions: 934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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