Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c05
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.7  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 258 LLSDGRSCVQGCTTELRP 311
           LLSDG  CV+  +T + P
Sbjct: 70  LLSDGLMCVEKVSTTIVP 87


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 213 RTRHLTDIDKRFVHIFGQIIFY 148
           R   LT IDK F+H    II Y
Sbjct: 269 RLYELTKIDKWFLHKMKNIIDY 290


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +1

Query: 517 KLPKINDQITITPHIPARTNSTAIESALKQQNQ 615
           KLP ++    +  H+P    S  +E  L+  ++
Sbjct: 100 KLPPLHPHTAMVTHLPQTLTSENVEILLEHSSK 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,796
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)