Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c02
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.53 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.6  
SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit l44...    25   6.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   6.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   6.5  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 96  NTFYKPNIIFFFYIYKNELLFVS 164
           NTF+K +I FF Y  K  L F+S
Sbjct: 66  NTFFKKSIFFFVYYCKQALEFIS 88


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 472 DNWKQVDMKKKAIHILKLTLIISQNDLVHDPH 567
           D WK++D++ + I  L ++  +  N    DPH
Sbjct: 283 DKWKRLDLRLQLIQCLAISYPLWSNSETWDPH 314


>SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit
           l44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +1

Query: 91  VIILFINQI-LSSSSTYIKMNCCSLVSLKLENGWTDLANFGLELFVEVQSRFKSSKRSNE 267
           +I  +IN++ + + + + K +  + + L + +  T  + +GL L   + S+  +SK S E
Sbjct: 1   MIFGYINKLSILNVNPFSKASQSAKLLLAVASKETSNSLYGLNLITSLASKDTNSKPSVE 60

Query: 268 LIYK 279
           ++YK
Sbjct: 61  VVYK 64


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 536 IMSVSFNIWIAFFFISTC 483
           I S+   +W  FFF++ C
Sbjct: 304 IQSIHLGLWFCFFFLTAC 321


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 209 PKLAKSVQPFSSFSETNEQQFIF 141
           P+L +S++P+ S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 275 TNCLKVAVLDKESDIDCLLSRKNISFLREAVLLS 376
           +N +  A LDKES +  L ++KN S+  E  L S
Sbjct: 50  SNAVSEASLDKESTVGNLENQKNRSYSSEIYLHS 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,420
Number of Sequences: 5004
Number of extensions: 44155
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)