Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c02
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permeas...    29   1.9  
AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion transpo...    29   1.9  
AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion transpo...    29   1.9  
Z81075-5|CAJ85746.1|  154|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    28   5.9  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    28   5.9  
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permease
           family protein 3 protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 551 RSF*EIMSVSFNIWIAFFFISTCFQLSTNSIGALTRGFAQL 429
           +S   +  + F IW+  FF++ C+ +    + A+  GFA L
Sbjct: 480 KSLWPVFKIDFTIWLMSFFLTVCYDMGEGLLMAI--GFAVL 518


>AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion
           transporter SULP-3b protein.
          Length = 762

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 551 RSF*EIMSVSFNIWIAFFFISTCFQLSTNSIGALTRGFAQL 429
           +S   +  + F IW+  FF++ C+ +    + A+  GFA L
Sbjct: 460 KSLWPVFKIDFTIWLMSFFLTVCYDMGEGLLMAI--GFAVL 498


>AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion
           transporter SULP-3a protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 551 RSF*EIMSVSFNIWIAFFFISTCFQLSTNSIGALTRGFAQL 429
           +S   +  + F IW+  FF++ C+ +    + A+  GFA L
Sbjct: 480 KSLWPVFKIDFTIWLMSFFLTVCYDMGEGLLMAI--GFAVL 518


>Z81075-5|CAJ85746.1|  154|Caenorhabditis elegans Hypothetical
           protein F35C12.2b protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 554 YMILIVIVFALMWSGWK 604
           +++LIV+VFA+  SGWK
Sbjct: 102 FIMLIVLVFAIFLSGWK 118


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 554 YMILIVIVFALMWSGWK 604
           +++LIV+VFA+  SGWK
Sbjct: 544 FIMLIVLVFAIFLSGWK 560


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +1

Query: 109 NQILSSSSTYIKMN----CCSLVSLKLENGWTDLAN--FGLELFVEVQ 234
           N  L S   Y++ N    C ++  + L+NGW+  AN   G+   VE Q
Sbjct: 703 NSALMSEQLYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEKQ 750


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 554 YMILIVIVFALMWSGWK 604
           +++LIV+VFA+  SGWK
Sbjct: 544 FIMLIVLVFAIFLSGWK 560


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 598 SRPHQGKHDNNEDHVRDH 545
           +R HQG+ D  EDH+ +H
Sbjct: 12  ARVHQGRRDRVEDHLHEH 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,150
Number of Sequences: 27780
Number of extensions: 235644
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)