Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21c02
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.4  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   9.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 507 SFFFHINLFPIVDEFYWSSHARLRPAWSGKT*INI 403
           SF   +NL  +     WSS   L  AW  K  I I
Sbjct: 480 SFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEI 514


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 507 SFFFHINLFPIVDEFYWSSHARLRPAWSGKT*INI 403
           SF   +NL  +     WSS   L  AW  K  I I
Sbjct: 518 SFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEI 552


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 492 INLFPIVDEFYWSSHARLRPAWSG 421
           +N+  I+D F  S   R+RP + G
Sbjct: 10  VNISAILDSFSVSYDKRVRPNYGG 33


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 492 INLFPIVDEFYWSSHARLRPAWSG 421
           +N+  I+D F  S   R+RP + G
Sbjct: 10  VNISAILDSFSVSYDKRVRPNYGG 33


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  VVVIILFINQILSSSSTYIKM 147
           ++ IILF +++LSS   + KM
Sbjct: 233 LIFIILFYSRLLSSIRNHEKM 253


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 142 KMNCCSLVSLKLENGWTDLANFGLELFVEVQSRFKSSKRSNELI 273
           K+   S   +K  NG+ D  NF   +  E+   F      N+LI
Sbjct: 58  KVQLFSECLIKKFNGYDDGGNFNEVVIREIAEIFLDENGVNKLI 101


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  VVVIILFINQILSSSSTYIKM 147
           ++ IILF +++LSS   + KM
Sbjct: 233 LIFIILFYSRLLSSIRNHEKM 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,400
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)