Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b24
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   1.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   2.9  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    26   2.9  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   3.8  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.8  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.1  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   8.9  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   8.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.9  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 304 MCFARPFLLPRFLCYDFL-IAFFCEVVDAVM 215
           +CF  P  L  F+CY F  +  F  V DA++
Sbjct: 203 ICFGAPLFLVIFICYIFFTVLSFFNVPDAIV 233


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 140 SYRTKDEYDCYVEGYVKCFWSLCDRHNSIDNF 235
           S R K   DCY++ Y +    L +  N+ D F
Sbjct: 874 SLRRKFNIDCYLKRYERALGHLKEMENAFDEF 905


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 167 CYVEGYVKCFWSLCDRHNSIDN 232
           C+++GYV+ FW   + H    N
Sbjct: 32  CFIKGYVRRFWMRSEDHRGTVN 53


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 438 WIP*CNFRIHSTCRFLYFHSLL 503
           WI  C++R+   C  +YF +LL
Sbjct: 31  WIDACHYRVLPACLNIYFSNLL 52


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 322 YYFKVPMCFARPFLLPR-FLCYDFLIAFFC-EVVDAVMSVTETPKTFNVAFHITIVFVFS 149
           YY  + +C  RPFL  +     D      C + ++ +++V    +T N   + T+  V++
Sbjct: 485 YYHLIRICLNRPFLSRKEVTANDLTPKTICTDSINEIVTVIRAHRTANGLRYSTLYIVYA 544

Query: 148 SI 143
           +I
Sbjct: 545 AI 546


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 218 NSIDNFTEKRNEKIIT--KEPRKQEW 289
           + ID FT+K+ +K I   KE R+++W
Sbjct: 99  SKIDEFTDKKEKKKIAKRKEKRERDW 124


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 298 FARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFV 155
           F  PF  P FLCYD L+    E +    S T T   F+   +  ++FV
Sbjct: 575 FNVPF--PVFLCYDILV----ETILPAGSQTLTDSVFSSKLYKLVIFV 616


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 433 NSGFLDVIFEFTPLVVFYIFIHC 501
           NS    ++  FT L +FY+ ++C
Sbjct: 318 NSWIFTLLLTFTQLTIFYLSLNC 340


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 462 FENYIKESRININVRQVLNEKQISLAD 382
           FEN  ++SR N+NV  ++  + +SLAD
Sbjct: 109 FENVTRKSRPNLNVGSLVYAR-VSLAD 134


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 343 RPFLF*KYYFKVPMCFARPFLLPRFLCYDFLIAFFCE 233
           RP+L   Y+    +CF +P ++   + +  LI FF +
Sbjct: 720 RPYLCSIYWAGSRLCFVQPRIILGIMYFTDLILFFLD 756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,427
Number of Sequences: 5004
Number of extensions: 39737
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)