Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b24
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 28 3.4
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 28 3.4
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 28 3.4
AL023822-1|CAD21649.1| 672|Caenorhabditis elegans Hypothetical ... 28 4.6
AL021572-3|CAA16517.2| 672|Caenorhabditis elegans Hypothetical ... 28 4.6
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 27 6.0
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 27 6.0
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 27 6.0
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 6.0
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 27 8.0
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/107 (21%), Positives = 44/107 (41%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADEFFS*NKTVFYSVVHSYS 328
+E EN ++ W E + + R+ L +S+ ++ N F + H+YS
Sbjct: 473 VERPEENENSNHWWGMRQTDMEF-LAVIAREYLASPAVSIDAGYYFGNGGKFQHICHTYS 531
Query: 327 KNIILKSLCVLQGHSCFRGSFVMIFSLRFSVKLSMLLCRSQRLQKHL 187
+ L + + FRG + + S+ + L + RLQK +
Sbjct: 532 HQRLENCLALAGNYQTFRGKGASVDVISQSM-IETLNNTASRLQKQV 577
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/107 (21%), Positives = 44/107 (41%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADEFFS*NKTVFYSVVHSYS 328
+E EN ++ W E + + R+ L +S+ ++ N F + H+YS
Sbjct: 473 VERPEENENSNHWWGMRQTDMEF-LAVIAREYLASPAVSIDAGYYFGNGGKFQHICHTYS 531
Query: 327 KNIILKSLCVLQGHSCFRGSFVMIFSLRFSVKLSMLLCRSQRLQKHL 187
+ L + + FRG + + S+ + L + RLQK +
Sbjct: 532 HQRLENCLALAGNYQTFRGKGASVDVISQSM-IETLNNTASRLQKQV 577
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/107 (21%), Positives = 44/107 (41%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADEFFS*NKTVFYSVVHSYS 328
+E EN ++ W E + + R+ L +S+ ++ N F + H+YS
Sbjct: 473 VERPEENENSNHWWGMRQTDMEF-LAVIAREYLASPAVSIDAGYYFGNGGKFQHICHTYS 531
Query: 327 KNIILKSLCVLQGHSCFRGSFVMIFSLRFSVKLSMLLCRSQRLQKHL 187
+ L + + FRG + + S+ + L + RLQK +
Sbjct: 532 HQRLENCLALAGNYQTFRGKGASVDVISQSM-IETLNNTASRLQKQV 577
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/107 (21%), Positives = 44/107 (41%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADEFFS*NKTVFYSVVHSYS 328
+E EN ++ W E + + R+ L +S+ ++ N F + H+YS
Sbjct: 473 VERPEENENSNHWWGMRQTDMEF-LAVIAREYLASPAVSIDAGYYFGNGGKFQHICHTYS 531
Query: 327 KNIILKSLCVLQGHSCFRGSFVMIFSLRFSVKLSMLLCRSQRLQKHL 187
+ L + + FRG + + S+ + L + RLQK +
Sbjct: 532 HQRLENCLALAGNYQTFRGKGASVDVISQSM-IETLNNTASRLQKQV 577
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/107 (21%), Positives = 44/107 (41%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADEFFS*NKTVFYSVVHSYS 328
+E EN ++ W E + + R+ L +S+ ++ N F + H+YS
Sbjct: 473 VERPEENENSNHWWGMRQTDMEF-LAVIAREYLASPAVSIDAGYYFGNGGKFQHICHTYS 531
Query: 327 KNIILKSLCVLQGHSCFRGSFVMIFSLRFSVKLSMLLCRSQRLQKHL 187
+ L + + FRG + + S+ + L + RLQK +
Sbjct: 532 HQRLENCLALAGNYQTFRGKGASVDVISQSM-IETLNNTASRLQKQV 577
>AL023822-1|CAD21649.1| 672|Caenorhabditis elegans Hypothetical
protein W06H3.3 protein.
Length = 672
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLN----EKQISLADEFFS*NKTVFYSVV 340
+ ++ENI D ++ S + +QV+N K + +AD + S NK + ++ +
Sbjct: 278 LSEISENIRKDLKFNMNHWTNLSELCDTFQQVVNIALVGKYVKIADAYASVNKALSHAAI 337
Query: 339 HSYSK 325
H+ K
Sbjct: 338 HAKRK 342
>AL021572-3|CAA16517.2| 672|Caenorhabditis elegans Hypothetical
protein W06H3.3 protein.
Length = 672
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -1
Query: 507 IEAMNENIENDKWSEFENYIKESRININVRQVLN----EKQISLADEFFS*NKTVFYSVV 340
+ ++ENI D ++ S + +QV+N K + +AD + S NK + ++ +
Sbjct: 278 LSEISENIRKDLKFNMNHWTNLSELCDTFQQVVNIALVGKYVKIADAYASVNKALSHAAI 337
Query: 339 HSYSK 325
H+ K
Sbjct: 338 HAKRK 342
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 253 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 89
L+AF ++D++ +T F F+I +FVFS+ R K + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 253 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 89
L+AF ++D++ +T F F+I +FVFS+ R K + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 253 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 89
L+AF ++D++ +T F F+I +FVFS+ R K + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 215 HNSIDNFTEKRNEKIITKEPRKQEWPCKTHRD 310
H IDN EK + T+E R+ +W K D
Sbjct: 304 HAFIDNLWEKFRQNSQTREERENQWATKNCND 335
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 480 NDKWSEFENYIK 445
NDKWS FE+Y+K
Sbjct: 347 NDKWSGFEDYVK 358
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 313 KVPMCFARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAF 176
K C+ P ++ F+ YD A + D + S+T+ P +V +
Sbjct: 235 KEKFCYVCPDVMKEFVKYDTDAAKWLRTYDGINSITKKPFNVDVGY 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,843
Number of Sequences: 27780
Number of extensions: 217994
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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