Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b23
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0002 - 11387119-11387780,11388756-11388954,11389033-113891... 28 2.0
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789... 28 2.6
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 28 2.6
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854 28 2.6
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 27 3.4
11_07_0006 - 27252755-27253303,27253324-27253748,27253833-272542... 27 6.0
10_08_0978 + 21994359-21996961,21997089-21998229 27 6.0
09_02_0275 + 6619030-6619161,6619277-6619766,6620609-6621034,662... 27 6.0
07_01_1027 - 8873582-8876275 27 6.0
06_01_0832 - 6269249-6271794,6272083-6272176 27 6.0
04_04_0955 + 29640612-29643305 27 6.0
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 27 6.0
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 26 7.9
08_01_0482 + 4236865-4236928,4237112-4237329 26 7.9
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 26 7.9
>09_03_0002 -
11387119-11387780,11388756-11388954,11389033-11389106,
11389840-11390323,11390439-11390450
Length = 476
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ EYL
Sbjct: 425 MNYVKNKLRNRMGNEYL 441
>10_08_0075 -
14676835-14677173,14677776-14678426,14678734-14678948,
14679510-14679783,14680249-14680410
Length = 546
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN+IKNK RS++ EYL
Sbjct: 381 MNYIKNKLRSKMGQEYL 397
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN+IKNK RS++ EYL
Sbjct: 728 MNYIKNKLRSKMGQEYL 744
>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
Length = 751
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN+IKNK RS++ EYL
Sbjct: 700 MNYIKNKLRSKMGQEYL 716
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 105 SDDGVNNCGFYNIFNQF 55
S DG +CGFYNI N +
Sbjct: 367 SSDGTFSCGFYNITNAY 383
>11_07_0006 -
27252755-27253303,27253324-27253748,27253833-27254258,
27255101-27255590,27255706-27255837
Length = 673
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ EYL
Sbjct: 655 MNYVKNKQRNRIGDEYL 671
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ +YL
Sbjct: 834 MNYVKNKLRNRMGDQYL 850
>09_02_0275 +
6619030-6619161,6619277-6619766,6620609-6621034,
6621119-6621543,6621564-6622112
Length = 673
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ EYL
Sbjct: 655 MNYVKNKQRNRIGDEYL 671
>07_01_1027 - 8873582-8876275
Length = 897
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ +YL
Sbjct: 834 MNYVKNKLRNRMGDQYL 850
>06_01_0832 - 6269249-6271794,6272083-6272176
Length = 879
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ +YL
Sbjct: 816 MNYVKNKLRNRMGDQYL 832
>04_04_0955 + 29640612-29643305
Length = 897
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ +YL
Sbjct: 834 MNYVKNKLRNRMGDQYL 850
>01_05_0251 +
19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ +YL
Sbjct: 834 MNYVKNKLRNRMGDQYL 850
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -1
Query: 134 RSPYYLPLRCLTMV-LIIVVSTTFL 63
R PY+LP C++++ L++++S +L
Sbjct: 167 RFPYFLPCLCISLIALVVLISCIWL 191
>08_01_0482 + 4236865-4236928,4237112-4237329
Length = 93
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 218 MNFIKNKFRSRLTGEYL 168
MN++KNK R+R+ +YL
Sbjct: 74 MNYVKNKLRNRMGEQYL 90
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -1
Query: 134 RSPYYLPLRCLTMVLIIVVSTTF 66
R PY+LP C++++ I+ + +F
Sbjct: 275 RFPYFLPCLCISLLAIVALLASF 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,088
Number of Sequences: 37544
Number of extensions: 148700
Number of successful extensions: 342
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -