Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b19
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...   261   2e-70
AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    47   1e-05
U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    30   0.98 
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    30   0.98 
Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF016662-5|AAB66059.2|  116|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score =  261 bits (640), Expect = 2e-70
 Identities = 126/168 (75%), Positives = 140/168 (83%)
 Frame = +1

Query: 55  KTRKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNI 234
           K RKE+DTFGEL+VP DK YGAQT RS MNF IGG EERMP PVI AFGILKKAAA VN 
Sbjct: 40  KIRKERDTFGELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVIHAFGILKKAAALVNT 99

Query: 235 EYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILG 414
           E+GL+KK+ADAI QA D+V+ GKL  + HFPLV WQTGSGTQSNMN NEVI+NRAI+ILG
Sbjct: 100 EFGLDKKLADAISQAADEVVDGKL--DEHFPLVTWQTGSGTQSNMNVNEVISNRAIEILG 157

Query: 415 GKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLVAL 558
           G+LGSK PVHPNDHVN SQSSNDT+PTAMHIAV  E+  RL+P L  L
Sbjct: 158 GELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPALKKL 205


>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +1

Query: 466 SQSSNDTYPTAMHIAVAMELRDRLMPGLVAL 558
           SQSSNDT+PTAMHIAV  E+  RL+P L  L
Sbjct: 2   SQSSNDTFPTAMHIAVGREVNSRLLPALKKL 32


>U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical
           protein T13A10.2 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 439 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 353
           P PCC V    +  RG + P+ CSC   Y
Sbjct: 93  PRPCCAVCHDSYASRGPKKPKVCSCLHTY 121


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 205 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 384
           LKK +A  N+   LEKK           +IS K        + ++ TGS   + M+  ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663

Query: 385 IANRAIQILGGKLGSKDP 438
              R     G +  SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 205 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 384
           LKK +A  N+   LEKK           +IS K        + ++ TGS   + M+  ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663

Query: 385 IANRAIQILGGKLGSKDP 438
              R     G +  SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681


>Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical
           protein M199.4 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 363 QHEHERGDCEPRHTNTGRETGQQGPGASQ 449
           +H ++  DCEP     GRE G++GP  +Q
Sbjct: 19  RHHYDYYDCEPERGPRGRE-GREGPRGAQ 46


>AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical
           protein Y79H2A.12 protein.
          Length = 175

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 436 PVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGLV 552
           PV+ +  V     SNDTYP  + +  A E  DR + GL+
Sbjct: 89  PVYFSSQVASGYESNDTYPNFLGVKTAEE--DRFVIGLL 125


>Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical
           protein F33H2.8 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 285 IAGLHDRVGNFLFKSIFDIDFGGCFL*YTESDNHG 181
           +A  H+R G       FD  F GC L Y  +  +G
Sbjct: 118 LANSHNRTGELFLVRSFDFLFAGCILFYYSTRQNG 152


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +1

Query: 331 VIWQTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIA 510
           V+ + G GT+++M  NE+ A  A QI   + G    V P  H N  + S+    T  ++ 
Sbjct: 21  VVEKKGDGTRTSMRQNEIYAYSA-QI---RTGDGCMVMPKIHWNSFEPSDWVSCTLEYVN 76

Query: 511 VAMELRDRLM 540
            A +++++ M
Sbjct: 77  KANQIKEKEM 86


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 162 NSTDREVHHRTHGLRAI*LVIWHVQLPKGIFFLPR--FDRLAFWV 34
           N+TDR V+    G  A+ LV+  +  P G F  P   F R+ F V
Sbjct: 116 NATDRNVYDGLLGTLALFLVVSALAFPNGPFIRPHPVFWRIVFGV 160


>U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical
           protein F19G12.1 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 439 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 353
           P PCC V    +  RG + P+  SC   Y
Sbjct: 91  PRPCCAVCLDSYASRGPKKPKVFSCLHTY 119


>AF016662-5|AAB66059.2|  116|Caenorhabditis elegans Hypothetical
           protein C33C12.7 protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 372 VHVGLSTGASLPD-DEGEVTLAVELPADDVIAGLHDRV 262
           VH+ + T    P  D G +TL     A + IA  HDRV
Sbjct: 8   VHIAMETACGKPPKDMGIITLGDGYEASENIAAHHDRV 45


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 342 DWLRYSVQHEHERGDCEPRHTNTGRETGQQGP 437
           DW +    H HE     P+HT  G E  +  P
Sbjct: 23  DW-KQKKTHSHEMSTVSPKHTEDGYEEKKSSP 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,633
Number of Sequences: 27780
Number of extensions: 291436
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)