Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b18
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.33 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   5.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 569 HFFNGPGSDLLFFCCAVSHVPGLRSSEEA*TRRFSYSHITQPSKLAA 429
           H+F   GS   +F   +S        EEA TR      ITQ +K  A
Sbjct: 298 HYFTKYGSGECYFSSDLSESETSSDEEEADTRPLKKEPITQSNKRTA 344


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 343 DPLENLHIETGPLHAKGLVKPLIFTVGVSAASLL 444
           DP+ N     G L   GL+ P +FT+  S A+++
Sbjct: 57  DPVTNSDTYIGFLFVLGLIVP-VFTIVSSYAAIV 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,418
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)