Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b17
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.052
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   2.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   4.5  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   4.5  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   6.0  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    25   7.9  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.9  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.052
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -2

Query: 498 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 319
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 318 LTGR 307
           L GR
Sbjct: 290 LFGR 293


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 29/116 (25%), Positives = 48/116 (41%)
 Frame = -1

Query: 451 RLLLPCAEREGHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYS 272
           R LL C +R    P +L   DV      ++DD + F+          T  GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163

Query: 271 YLHNSRGSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 104
           + H+S      V+         E + L   DR       K++  P  N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 349 DFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRGSGLLVLGRESVCGDVEVSL 194
           +FI+ CF    + +  GH D +++ S   +S GS    +G  S   D++VSL
Sbjct: 661 EFIQRCFHFADEASPDGHSDTLIDISDHMSSTGSENRSVGANS---DIKVSL 709


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 89  NNLTGRDLEEFNRIHFGRRNNLEI 160
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 59  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 169
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 349 DFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRGSGLLVLGRES 221
           D   N F+     ++ GH+D +   +    S GSG  VLGR++
Sbjct: 353 DKSSNLFVTSKQSSVSGHKDNLTEEAPFSVSEGSG--VLGRQA 393


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 92  NLTGRDLEEFNRIHFGRRNNLEIKLKESSI 181
           NL  + ++E NR+   R N+LEI+  +  I
Sbjct: 74  NLDDQGIDEENRVRLERMNDLEIEGAQEEI 103


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 418 HVPQLLETDDVNTLLAGNIDDFLDFIENC 332
           ++P+LLE  D+N L  G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,160
Number of Sequences: 5004
Number of extensions: 45253
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)